Results 21 - 40 of 430 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 28058 | 0.66 | 0.88611 |
Target: 5'- aGGCGGgggagaGACAGgAGgGGgGagGACGACg -3' miRNA: 3'- -UCGCCg-----UUGUCgUCgCCgCa-CUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 119754 | 0.66 | 0.884112 |
Target: 5'- uGCGGCAgcuggaguaccaGCAcaccugggaccggcGCAGCGGCGacgagGuCGGCg -3' miRNA: 3'- uCGCCGU------------UGU--------------CGUCGCCGCa----CuGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 142768 | 0.66 | 0.882094 |
Target: 5'- gGGCGGgaUAACAGUAGUaGUcgucuguaagcgaugGUGACGACg -3' miRNA: 3'- -UCGCC--GUUGUCGUCGcCG---------------CACUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 53352 | 0.66 | 0.879376 |
Target: 5'- cGcCGGC-GCGGCGGCGGaggGGcCGACa -3' miRNA: 3'- uC-GCCGuUGUCGUCGCCgcaCU-GCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 84759 | 0.66 | 0.879376 |
Target: 5'- --gGGC-GCGGCGGCGGCGacguUGuuGGCa -3' miRNA: 3'- ucgCCGuUGUCGUCGCCGC----ACugCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 127368 | 0.66 | 0.879376 |
Target: 5'- cGUGGUGcGCGGCAG-GuGCGUGAUGAa -3' miRNA: 3'- uCGCCGU-UGUCGUCgC-CGCACUGCUg -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 169716 | 0.66 | 0.879376 |
Target: 5'- cGUGGCGuuCAGguGCGuccCGUaGACGGCg -3' miRNA: 3'- uCGCCGUu-GUCguCGCc--GCA-CUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 69782 | 0.66 | 0.879376 |
Target: 5'- -aCGGCGACgaGGgAGCGGCcGUcgaGAUGACg -3' miRNA: 3'- ucGCCGUUG--UCgUCGCCG-CA---CUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 198374 | 0.66 | 0.879376 |
Target: 5'- uAGCGccgGACGGCGuuGUGGCG-GGCGGCg -3' miRNA: 3'- -UCGCcg-UUGUCGU--CGCCGCaCUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 6057 | 0.66 | 0.879376 |
Target: 5'- cAGCGGCccc-GCAG-GGCGUGAUcACg -3' miRNA: 3'- -UCGCCGuuguCGUCgCCGCACUGcUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 15512 | 0.66 | 0.879376 |
Target: 5'- -cCGGCGcucggguUGGCGGCGGCauGUGGCGAa -3' miRNA: 3'- ucGCCGUu------GUCGUCGCCG--CACUGCUg -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 70303 | 0.66 | 0.879376 |
Target: 5'- aAGCGGUgcaggucgccCAGCAGCgaGGCgGUGACGcCg -3' miRNA: 3'- -UCGCCGuu--------GUCGUCG--CCG-CACUGCuG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 222659 | 0.66 | 0.875237 |
Target: 5'- cAGCGccuccacgcugcccaGCAugAGCAGCGGCucgaccucgGUG-CGGCc -3' miRNA: 3'- -UCGC---------------CGUugUCGUCGCCG---------CACuGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 137474 | 0.66 | 0.872437 |
Target: 5'- gAGUGG-AAgGGCGcCGGCGUGucGCGGCg -3' miRNA: 3'- -UCGCCgUUgUCGUcGCCGCAC--UGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 151318 | 0.66 | 0.872437 |
Target: 5'- aGGCGGCca-GGCgGGUGGCGUccGAgGGCc -3' miRNA: 3'- -UCGCCGuugUCG-UCGCCGCA--CUgCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 37581 | 0.66 | 0.872437 |
Target: 5'- cGCaGCAcCAGCAGCacGGUGUucuuucugGGCGACu -3' miRNA: 3'- uCGcCGUuGUCGUCG--CCGCA--------CUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 100529 | 0.66 | 0.872437 |
Target: 5'- cGGUGGCGggACAGCuGgGGauccGACGACg -3' miRNA: 3'- -UCGCCGU--UGUCGuCgCCgca-CUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 83889 | 0.66 | 0.872437 |
Target: 5'- gAGCGcGCGACAaauGUA-CGGgGUGAUGGCc -3' miRNA: 3'- -UCGC-CGUUGU---CGUcGCCgCACUGCUG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 77017 | 0.66 | 0.872437 |
Target: 5'- cAGgGGCAGCAuGCgguugaggccGGCGGUgGUGGCGcCg -3' miRNA: 3'- -UCgCCGUUGU-CG----------UCGCCG-CACUGCuG- -5' |
|||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 102352 | 0.66 | 0.872437 |
Target: 5'- gGGCGGCAGguGgCAgauGUGGCGccgccGGCGAUg -3' miRNA: 3'- -UCGCCGUUguC-GU---CGCCGCa----CUGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home