miRNA display CGI


Results 21 - 40 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 16492 0.69 0.757066
Target:  5'- uGCGGCGACgcuacgagcacgGGCuGCGGCGcu-CGGCu -3'
miRNA:   3'- uCGCCGUUG------------UCGuCGCCGCacuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 16976 0.72 0.541818
Target:  5'- cAGCcGCAGCAGCAGCcgcagggacagcaGGCGcccgcggUGGCGGCg -3'
miRNA:   3'- -UCGcCGUUGUCGUCG-------------CCGC-------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 17049 0.68 0.810202
Target:  5'- -aCGGCAGCAcCAGCaGCGccGACGAUa -3'
miRNA:   3'- ucGCCGUUGUcGUCGcCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 17050 0.72 0.543736
Target:  5'- cGGCGGUAACGGCGcCGacaGCGagGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUcGC---CGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 17144 0.73 0.524664
Target:  5'- gAGUGGUucCAGCAGCGGCGcGA-GGCc -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCaCUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 17493 0.69 0.729006
Target:  5'- uAGCGGCGccgccggucACGGCGGUucccGGCccGGCGGCg -3'
miRNA:   3'- -UCGCCGU---------UGUCGUCG----CCGcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 18735 0.78 0.289579
Target:  5'- cGGCGGCGAUcGUGGCGGCgGUGGCGcCg -3'
miRNA:   3'- -UCGCCGUUGuCGUCGCCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 19727 0.66 0.88611
Target:  5'- cGCuGCugacCAGC-GUGGCGgUGACGGCg -3'
miRNA:   3'- uCGcCGuu--GUCGuCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 19905 0.66 0.88611
Target:  5'- cGGCGuGCGGgAGCGGCuGGUGguccugGACGcCg -3'
miRNA:   3'- -UCGC-CGUUgUCGUCG-CCGCa-----CUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 26035 0.68 0.784204
Target:  5'- cGGCGGUgaagagGACGGCGGCGaGCGgGAgGGg -3'
miRNA:   3'- -UCGCCG------UUGUCGUCGC-CGCaCUgCUg -5'
14197 3' -58.5 NC_003521.1 + 27974 0.8 0.219542
Target:  5'- aGGCGGCGcucacggccACGGCGGCaGCGUGAgCGGCa -3'
miRNA:   3'- -UCGCCGU---------UGUCGUCGcCGCACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 28058 0.66 0.88611
Target:  5'- aGGCGGgggagaGACAGgAGgGGgGagGACGACg -3'
miRNA:   3'- -UCGCCg-----UUGUCgUCgCCgCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 28252 0.75 0.408412
Target:  5'- aAGaCGGCGccgagaggaACAGCGGCGGCGaUGACaGCa -3'
miRNA:   3'- -UC-GCCGU---------UGUCGUCGCCGC-ACUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 28837 0.69 0.757066
Target:  5'- uGCGGCGccuggacgacgaGCuGCGGCGGCGcGGC-ACg -3'
miRNA:   3'- uCGCCGU------------UGuCGUCGCCGCaCUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 30844 0.71 0.631649
Target:  5'- gGGCGccuuGCGACGGCAGCGGU-UGGCGu- -3'
miRNA:   3'- -UCGC----CGUUGUCGUCGCCGcACUGCug -5'
14197 3' -58.5 NC_003521.1 + 30974 0.72 0.563029
Target:  5'- cGGCacGCAGCAGCAGCuGCGgaucgggauggGGCGACg -3'
miRNA:   3'- -UCGc-CGUUGUCGUCGcCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 31089 0.71 0.621791
Target:  5'- cAGCGaCGACGGCGGCGGcCGguacacGCGGCg -3'
miRNA:   3'- -UCGCcGUUGUCGUCGCC-GCac----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 31304 0.7 0.700247
Target:  5'- cGCGGCAGCGGCGaCGGUcaccGUGACc-- -3'
miRNA:   3'- uCGCCGUUGUCGUcGCCG----CACUGcug -5'
14197 3' -58.5 NC_003521.1 + 31704 0.78 0.289579
Target:  5'- gGGCGGCGGCAGCAuGUGcGCGUGcugggacgccGCGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGU-CGC-CGCAC----------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 31915 0.7 0.690544
Target:  5'- uGCGGCA--GGCAGCG-CGcGAUGACu -3'
miRNA:   3'- uCGCCGUugUCGUCGCcGCaCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.