miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 63 0.71 0.611941
Target:  5'- -cCGGUuuCcGCGGCGGCGUG-CGGCg -3'
miRNA:   3'- ucGCCGuuGuCGUCGCCGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 405 0.68 0.810202
Target:  5'- cGCGGCuguGACuGCAGCuGUGUGcUGGCg -3'
miRNA:   3'- uCGCCG---UUGuCGUCGcCGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 3197 0.67 0.818579
Target:  5'- aAG-GGCAACAGCaacccgAGCGGUGUGuGCGu- -3'
miRNA:   3'- -UCgCCGUUGUCG------UCGCCGCAC-UGCug -5'
14197 3' -58.5 NC_003521.1 + 5302 0.7 0.651357
Target:  5'- -cCGGCAuguuucGCGGgGGCGGCGUGccccgccggccGCGACu -3'
miRNA:   3'- ucGCCGU------UGUCgUCGCCGCAC-----------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 5512 0.72 0.53417
Target:  5'- -uCGGCAggaguaGCAGCAGCGaCGgUGACGGCa -3'
miRNA:   3'- ucGCCGU------UGUCGUCGCcGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 6057 0.66 0.879376
Target:  5'- cAGCGGCccc-GCAG-GGCGUGAUcACg -3'
miRNA:   3'- -UCGCCGuuguCGUCgCCGCACUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 6081 0.68 0.801676
Target:  5'- cGaCGGCcGguGCGGCGGCGUuccgccACGGCu -3'
miRNA:   3'- uC-GCCGuUguCGUCGCCGCAc-----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 6201 0.74 0.442529
Target:  5'- uGCGGCAAguGacuguGCGGCaUGACGGCg -3'
miRNA:   3'- uCGCCGUUguCgu---CGCCGcACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 6388 0.7 0.671009
Target:  5'- gAGgGGCGccGCAGCuaccGCGGCG--GCGACg -3'
miRNA:   3'- -UCgCCGU--UGUCGu---CGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 6445 0.67 0.842737
Target:  5'- uGCGaCAACAGCacgggaggAGCGGa-UGACGGCa -3'
miRNA:   3'- uCGCcGUUGUCG--------UCGCCgcACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 6501 0.76 0.345345
Target:  5'- aGGCGGUGACGGCAGaGGCucaccgGUGACGAg -3'
miRNA:   3'- -UCGCCGUUGUCGUCgCCG------CACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 7435 0.71 0.611941
Target:  5'- gAGaCGGCAGCGGCAGCuccGGaucccGGCGACg -3'
miRNA:   3'- -UC-GCCGUUGUCGUCG---CCgca--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 7446 0.67 0.826798
Target:  5'- cGCGGCGcACAGCAccacGCGGgaCGUG-CGAa -3'
miRNA:   3'- uCGCCGU-UGUCGU----CGCC--GCACuGCUg -5'
14197 3' -58.5 NC_003521.1 + 7644 0.68 0.784204
Target:  5'- cGaCGGUAACGGCGGCcGCcacGGCGGCg -3'
miRNA:   3'- uC-GCCGUUGUCGUCGcCGca-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 7737 0.74 0.469144
Target:  5'- gGGCGGCGcgAGCGGCGGa--GGCGGCg -3'
miRNA:   3'- -UCGCCGUugUCGUCGCCgcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 10018 0.68 0.766225
Target:  5'- --gGGCAGCcGCAGCaGCGUGACc-- -3'
miRNA:   3'- ucgCCGUUGuCGUCGcCGCACUGcug -5'
14197 3' -58.5 NC_003521.1 + 13457 0.68 0.793007
Target:  5'- aAGCGcaGCGGCGGUAGCGcCGUcgacggucugGGCGACg -3'
miRNA:   3'- -UCGC--CGUUGUCGUCGCcGCA----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 13650 0.68 0.784204
Target:  5'- gGGCGGCGgagGCGGgAGaagaGGCucggagaggGUGGCGGCg -3'
miRNA:   3'- -UCGCCGU---UGUCgUCg---CCG---------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 15512 0.66 0.879376
Target:  5'- -cCGGCGcucggguUGGCGGCGGCauGUGGCGAa -3'
miRNA:   3'- ucGCCGUu------GUCGUCGCCG--CACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 15655 0.7 0.700247
Target:  5'- gAGCGGCAgcACAGCgccgaGGUGGUGc-GCGACu -3'
miRNA:   3'- -UCGCCGU--UGUCG-----UCGCCGCacUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.