miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 170209 0.66 0.865299
Target:  5'- uAGUGGCAcgaGgGGUcgucgacuuAGCGGUGgUGAUGACa -3'
miRNA:   3'- -UCGCCGU---UgUCG---------UCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 169716 0.66 0.879376
Target:  5'- cGUGGCGuuCAGguGCGuccCGUaGACGGCg -3'
miRNA:   3'- uCGCCGUu-GUCguCGCc--GCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 28058 0.66 0.88611
Target:  5'- aGGCGGgggagaGACAGgAGgGGgGagGACGACg -3'
miRNA:   3'- -UCGCCg-----UUGUCgUCgCCgCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 105018 0.66 0.872437
Target:  5'- gAGCGGgAACGGgAGCGcuuCGagGACGGCc -3'
miRNA:   3'- -UCGCCgUUGUCgUCGCc--GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 37581 0.66 0.872437
Target:  5'- cGCaGCAcCAGCAGCacGGUGUucuuucugGGCGACu -3'
miRNA:   3'- uCGcCGUuGUCGUCG--CCGCA--------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 49161 0.66 0.872437
Target:  5'- cGCGGCuGCuGCuGgGGCugauccGUGACGAUu -3'
miRNA:   3'- uCGCCGuUGuCGuCgCCG------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 196332 0.66 0.865299
Target:  5'- cGGCGGCuGCAGCucgauuuccAGCGcgugcagguaguGCGUGGCGu- -3'
miRNA:   3'- -UCGCCGuUGUCG---------UCGC------------CGCACUGCug -5'
14197 3' -58.5 NC_003521.1 + 151318 0.66 0.872437
Target:  5'- aGGCGGCca-GGCgGGUGGCGUccGAgGGCc -3'
miRNA:   3'- -UCGCCGuugUCG-UCGCCGCA--CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 100529 0.66 0.872437
Target:  5'- cGGUGGCGggACAGCuGgGGauccGACGACg -3'
miRNA:   3'- -UCGCCGU--UGUCGuCgCCgca-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 113596 0.66 0.865299
Target:  5'- cGGgGGCAACGGgGGCGGCGcu-CuGCu -3'
miRNA:   3'- -UCgCCGUUGUCgUCGCCGCacuGcUG- -5'
14197 3' -58.5 NC_003521.1 + 70303 0.66 0.879376
Target:  5'- aAGCGGUgcaggucgccCAGCAGCgaGGCgGUGACGcCg -3'
miRNA:   3'- -UCGCCGuu--------GUCGUCG--CCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 224568 0.66 0.865299
Target:  5'- cAGCGGCAGC-GCAGCcgcaGGC-UGAgGuACa -3'
miRNA:   3'- -UCGCCGUUGuCGUCG----CCGcACUgC-UG- -5'
14197 3' -58.5 NC_003521.1 + 137474 0.66 0.872437
Target:  5'- gAGUGG-AAgGGCGcCGGCGUGucGCGGCg -3'
miRNA:   3'- -UCGCCgUUgUCGUcGCCGCAC--UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 149758 0.66 0.868178
Target:  5'- uGCGGCGAgGGCGGCcGCGcGguacgccucaacgccACGGCg -3'
miRNA:   3'- uCGCCGUUgUCGUCGcCGCaC---------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 87379 0.66 0.872437
Target:  5'- aGGUGGagGACgaGGCGGCGGagGUGACGcCg -3'
miRNA:   3'- -UCGCCg-UUG--UCGUCGCCg-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 222659 0.66 0.875237
Target:  5'- cAGCGccuccacgcugcccaGCAugAGCAGCGGCucgaccucgGUG-CGGCc -3'
miRNA:   3'- -UCGC---------------CGUugUCGUCGCCG---------CACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 140013 0.66 0.88611
Target:  5'- gAGUGGUAgucGCGGUAGCGGcCGcagaaggccaUGAgCGGCa -3'
miRNA:   3'- -UCGCCGU---UGUCGUCGCC-GC----------ACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 127368 0.66 0.879376
Target:  5'- cGUGGUGcGCGGCAG-GuGCGUGAUGAa -3'
miRNA:   3'- uCGCCGU-UGUCGUCgC-CGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 69782 0.66 0.879376
Target:  5'- -aCGGCGACgaGGgAGCGGCcGUcgaGAUGACg -3'
miRNA:   3'- ucGCCGUUG--UCgUCGCCG-CA---CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 78138 0.66 0.865299
Target:  5'- gGGC-GCGuUAGCGGCGGCGgccGCGAa -3'
miRNA:   3'- -UCGcCGUuGUCGUCGCCGCac-UGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.