miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 96785 0.79 0.246794
Target:  5'- cGcCGGCAGCAGCGGCGGCGcucggGcACGAUc -3'
miRNA:   3'- uC-GCCGUUGUCGUCGCCGCa----C-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 91924 0.8 0.198199
Target:  5'- cGGCGGCGGCgaugcgguggacccGGCGGCGGacccCGUGGCGGCg -3'
miRNA:   3'- -UCGCCGUUG--------------UCGUCGCC----GCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 145900 0.8 0.199627
Target:  5'- cGGCGGCGGgAGCAGCGGCGguucgcaaACGGCc -3'
miRNA:   3'- -UCGCCGUUgUCGUCGCCGCac------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163749 0.8 0.204453
Target:  5'- cGGCGGCAACAGCGGCGcucaCGgcGGCGGCa -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCc---GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 207443 0.8 0.204453
Target:  5'- gAGCGGCGGCuGGCGGCGuGUGUGAgUGACg -3'
miRNA:   3'- -UCGCCGUUG-UCGUCGC-CGCACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 192298 0.8 0.214409
Target:  5'- cGuCGGCAccguccGCGGUAGCGGCGUcGGCGGCa -3'
miRNA:   3'- uC-GCCGU------UGUCGUCGCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 27974 0.8 0.219542
Target:  5'- aGGCGGCGcucacggccACGGCGGCaGCGUGAgCGGCa -3'
miRNA:   3'- -UCGCCGU---------UGUCGUCGcCGCACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 150625 0.79 0.230121
Target:  5'- uGCGGCGGCugcugcgcaGGCGGgGGCGUGcGCGACg -3'
miRNA:   3'- uCGCCGUUG---------UCGUCgCCGCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 135773 0.79 0.233924
Target:  5'- aGGCGGUGGCGGCAGUGGCGcUGcgggaggaggagcaGCGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGC-AC--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 102815 0.81 0.1949
Target:  5'- gGGCGGCAGCaAGUAGCGGCGcuGCGAg -3'
miRNA:   3'- -UCGCCGUUG-UCGUCGCCGCacUGCUg -5'
14197 3' -58.5 NC_003521.1 + 91861 0.81 0.185292
Target:  5'- gGGCGGCGgaccaggACGGCGGCGGCGguGCGACc -3'
miRNA:   3'- -UCGCCGU-------UGUCGUCGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 92010 0.81 0.181304
Target:  5'- gAGCGGCGaggcGCGGCGGCGGCGgcgGugGGu -3'
miRNA:   3'- -UCGCCGU----UGUCGUCGCCGCa--CugCUg -5'
14197 3' -58.5 NC_003521.1 + 123614 0.86 0.087858
Target:  5'- cAGgGGCAGCcgccguAGCAGCGGCGUGAUGAUg -3'
miRNA:   3'- -UCgCCGUUG------UCGUCGCCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186849 0.83 0.128432
Target:  5'- uGGCGGCc-CAGCGGCGGCGUGcagcACGGCu -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCAC----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 218704 0.83 0.138404
Target:  5'- aGGCGGaggaGACGGCGGCGGCGgcgGGCGAg -3'
miRNA:   3'- -UCGCCg---UUGUCGUCGCCGCa--CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 168537 0.83 0.145442
Target:  5'- uGGCGGCcagcGCGGCGGCGGCGcUGGCGGg -3'
miRNA:   3'- -UCGCCGu---UGUCGUCGCCGC-ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 163201 0.82 0.149083
Target:  5'- uGGUGGCGGCGGCAGCGGCaGUagcuccGGCGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCG-CA------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 196726 0.82 0.152806
Target:  5'- cGGCGGCGACGGUGGUGGCG--GCGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 150564 0.82 0.156613
Target:  5'- gGGUGGUGGCGGCGGCGGCGgcGCGGCu -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74573 0.82 0.164486
Target:  5'- gGGCGGCGACggAGCGGCGGCGcGGCGuCc -3'
miRNA:   3'- -UCGCCGUUG--UCGUCGCCGCaCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.