miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 73241 1.1 0.002215
Target:  5'- gAGCGGCAACAGCAGCGGCGUGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186765 0.81 0.181304
Target:  5'- cGGCGGCAucgGCggaGGCGGCGGUGgUGGCGGCg -3'
miRNA:   3'- -UCGCCGU---UG---UCGUCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 71859 0.81 0.190272
Target:  5'- cGuCGGCGACAGCAGCGGgaGcGACGGCg -3'
miRNA:   3'- uC-GCCGUUGUCGUCGCCg-CaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 199379 0.66 0.892636
Target:  5'- cGUGGUguaGACGGCGGCGGgG-GuCGAg -3'
miRNA:   3'- uCGCCG---UUGUCGUCGCCgCaCuGCUg -5'
14197 3' -58.5 NC_003521.1 + 98472 0.9 0.04478
Target:  5'- cGGCGGCGGCcGCGGCGGcCGUGGCGGCg -3'
miRNA:   3'- -UCGCCGUUGuCGUCGCC-GCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 85110 0.88 0.067925
Target:  5'- -uCGGCGGCGGCAGCGGCG-GGCGGCa -3'
miRNA:   3'- ucGCCGUUGUCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76222 0.85 0.099807
Target:  5'- gAGUGGCGGCGGcCGGUGGCGUGGCGGu -3'
miRNA:   3'- -UCGCCGUUGUC-GUCGCCGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 108281 0.84 0.110454
Target:  5'- cGGCGGCAccgaggGCGGUGGUGGCgGUGACGACg -3'
miRNA:   3'- -UCGCCGU------UGUCGUCGCCG-CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 140549 0.82 0.156613
Target:  5'- aGGCGGUGGCugcuGCGGCGGCGgcGGCGACa -3'
miRNA:   3'- -UCGCCGUUGu---CGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 205348 0.81 0.176962
Target:  5'- cGGCGGCGGCAGCuGCGcCGUGcACGACc -3'
miRNA:   3'- -UCGCCGUUGUCGuCGCcGCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 164214 0.82 0.164486
Target:  5'- gGGCGGCggUGGUAGCGGCGgcugGACGGu -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 76324 0.83 0.145442
Target:  5'- uGGCGGCGACAGCuGCGGaggcgacgGUGACGGCn -3'
miRNA:   3'- -UCGCCGUUGUCGuCGCCg-------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 98637 0.97 0.015981
Target:  5'- cGGCGGCGGCGGUAGCGGCGUcGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 113842 0.82 0.168554
Target:  5'- cAGCGGCAGCggGGCGGcCGGCGacGACGGCg -3'
miRNA:   3'- -UCGCCGUUG--UCGUC-GCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76358 0.92 0.032669
Target:  5'- uGCGGCGGCGGCAGCGGCGaccgUGACGGCc -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGC----ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 116683 0.83 0.13168
Target:  5'- cAGCGGCGGCggaGGCAGCGGCGcgGGCGGg -3'
miRNA:   3'- -UCGCCGUUG---UCGUCGCCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 163354 0.81 0.175677
Target:  5'- uAGCGGUAGCAGCGGCGGCGgcaGugucacgggcaccaACGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa--C--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 135248 0.81 0.18574
Target:  5'- cGGCGGCGacgacACGGCGGCGGaCGccGACGACg -3'
miRNA:   3'- -UCGCCGU-----UGUCGUCGCC-GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 110687 0.91 0.041393
Target:  5'- cGGUGGCGGCAGCGGCGGCGccgccGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 190540 0.88 0.069704
Target:  5'- uGCGGCGGCAGCAGCGGCG-GAccCGGCu -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGCaCU--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.