miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 73241 1.1 0.002215
Target:  5'- gAGCGGCAACAGCAGCGGCGUGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 98637 0.97 0.015981
Target:  5'- cGGCGGCGGCGGUAGCGGCGUcGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76358 0.92 0.032669
Target:  5'- uGCGGCGGCGGCAGCGGCGaccgUGACGGCc -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGC----ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 110687 0.91 0.041393
Target:  5'- cGGUGGCGGCAGCGGCGGCGccgccGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 98472 0.9 0.04478
Target:  5'- cGGCGGCGGCcGCGGCGGcCGUGGCGGCg -3'
miRNA:   3'- -UCGCCGUUGuCGUCGCC-GCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74792 0.89 0.058135
Target:  5'- cGGCGGCAGCGGUAGCGGCGagacgcggacgGACGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 85110 0.88 0.067925
Target:  5'- -uCGGCGGCGGCAGCGGCG-GGCGGCa -3'
miRNA:   3'- ucGCCGUUGUCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 190540 0.88 0.069704
Target:  5'- uGCGGCGGCAGCAGCGGCG-GAccCGGCu -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGCaCU--GCUG- -5'
14197 3' -58.5 NC_003521.1 + 123614 0.86 0.087858
Target:  5'- cAGgGGCAGCcgccguAGCAGCGGCGUGAUGAUg -3'
miRNA:   3'- -UCgCCGUUG------UCGUCGCCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76222 0.85 0.099807
Target:  5'- gAGUGGCGGCGGcCGGUGGCGUGGCGGu -3'
miRNA:   3'- -UCGCCGUUGUC-GUCGCCGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 108281 0.84 0.110454
Target:  5'- cGGCGGCAccgaggGCGGUGGUGGCgGUGACGACg -3'
miRNA:   3'- -UCGCCGU------UGUCGUCGCCG-CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186849 0.83 0.128432
Target:  5'- uGGCGGCc-CAGCGGCGGCGUGcagcACGGCu -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCAC----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 116683 0.83 0.13168
Target:  5'- cAGCGGCGGCggaGGCAGCGGCGcgGGCGGg -3'
miRNA:   3'- -UCGCCGUUG---UCGUCGCCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 218704 0.83 0.138404
Target:  5'- aGGCGGaggaGACGGCGGCGGCGgcgGGCGAg -3'
miRNA:   3'- -UCGCCg---UUGUCGUCGCCGCa--CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 168537 0.83 0.145442
Target:  5'- uGGCGGCcagcGCGGCGGCGGCGcUGGCGGg -3'
miRNA:   3'- -UCGCCGu---UGUCGUCGCCGC-ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 76324 0.83 0.145442
Target:  5'- uGGCGGCGACAGCuGCGGaggcgacgGUGACGGCn -3'
miRNA:   3'- -UCGCCGUUGUCGuCGCCg-------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163201 0.82 0.149083
Target:  5'- uGGUGGCGGCGGCAGCGGCaGUagcuccGGCGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCG-CA------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 196726 0.82 0.152806
Target:  5'- cGGCGGCGACGGUGGUGGCG--GCGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 140549 0.82 0.156613
Target:  5'- aGGCGGUGGCugcuGCGGCGGCGgcGGCGACa -3'
miRNA:   3'- -UCGCCGUUGu---CGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 150564 0.82 0.156613
Target:  5'- gGGUGGUGGCGGCGGCGGCGgcGCGGCu -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCacUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.