miRNA display CGI


Results 21 - 40 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 186639 0.82 0.160506
Target:  5'- uGGCGGCAagucgacgucgcGCGGCGGUGGCGgaGGCGGCg -3'
miRNA:   3'- -UCGCCGU------------UGUCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74573 0.82 0.164486
Target:  5'- gGGCGGCGACggAGCGGCGGCGcGGCGuCc -3'
miRNA:   3'- -UCGCCGUUG--UCGUCGCCGCaCUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 164214 0.82 0.164486
Target:  5'- gGGCGGCggUGGUAGCGGCGgcugGACGGu -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 113842 0.82 0.168554
Target:  5'- cAGCGGCAGCggGGCGGcCGGCGacGACGGCg -3'
miRNA:   3'- -UCGCCGUUG--UCGUC-GCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163354 0.81 0.175677
Target:  5'- uAGCGGUAGCAGCGGCGGCGgcaGugucacgggcaccaACGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa--C--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 205348 0.81 0.176962
Target:  5'- cGGCGGCGGCAGCuGCGcCGUGcACGACc -3'
miRNA:   3'- -UCGCCGUUGUCGuCGCcGCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 92010 0.81 0.181304
Target:  5'- gAGCGGCGaggcGCGGCGGCGGCGgcgGugGGu -3'
miRNA:   3'- -UCGCCGU----UGUCGUCGCCGCa--CugCUg -5'
14197 3' -58.5 NC_003521.1 + 186765 0.81 0.181304
Target:  5'- cGGCGGCAucgGCggaGGCGGCGGUGgUGGCGGCg -3'
miRNA:   3'- -UCGCCGU---UG---UCGUCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 91861 0.81 0.185292
Target:  5'- gGGCGGCGgaccaggACGGCGGCGGCGguGCGACc -3'
miRNA:   3'- -UCGCCGU-------UGUCGUCGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 135248 0.81 0.18574
Target:  5'- cGGCGGCGacgacACGGCGGCGGaCGccGACGACg -3'
miRNA:   3'- -UCGCCGU-----UGUCGUCGCC-GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 117311 0.81 0.190272
Target:  5'- cGCGGauugcgGGCGGCAGCGGCGacGACGACa -3'
miRNA:   3'- uCGCCg-----UUGUCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 71859 0.81 0.190272
Target:  5'- cGuCGGCGACAGCAGCGGgaGcGACGGCg -3'
miRNA:   3'- uC-GCCGUUGUCGUCGCCg-CaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 102815 0.81 0.1949
Target:  5'- gGGCGGCAGCaAGUAGCGGCGcuGCGAg -3'
miRNA:   3'- -UCGCCGUUG-UCGUCGCCGCacUGCUg -5'
14197 3' -58.5 NC_003521.1 + 91924 0.8 0.198199
Target:  5'- cGGCGGCGGCgaugcgguggacccGGCGGCGGacccCGUGGCGGCg -3'
miRNA:   3'- -UCGCCGUUG--------------UCGUCGCC----GCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 145900 0.8 0.199627
Target:  5'- cGGCGGCGGgAGCAGCGGCGguucgcaaACGGCc -3'
miRNA:   3'- -UCGCCGUUgUCGUCGCCGCac------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163749 0.8 0.204453
Target:  5'- cGGCGGCAACAGCGGCGcucaCGgcGGCGGCa -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCc---GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 207443 0.8 0.204453
Target:  5'- gAGCGGCGGCuGGCGGCGuGUGUGAgUGACg -3'
miRNA:   3'- -UCGCCGUUG-UCGUCGC-CGCACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 124458 0.8 0.20938
Target:  5'- cGCGGCAGCAGCAGCucGGCcucgucgGGCGGCu -3'
miRNA:   3'- uCGCCGUUGUCGUCG--CCGca-----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 192298 0.8 0.214409
Target:  5'- cGuCGGCAccguccGCGGUAGCGGCGUcGGCGGCa -3'
miRNA:   3'- uC-GCCGU------UGUCGUCGCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 207940 0.8 0.214409
Target:  5'- cGGCGGCAGCAcCGGCGGCGcgGGCGcCa -3'
miRNA:   3'- -UCGCCGUUGUcGUCGCCGCa-CUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.