miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 240612 0.71 0.611941
Target:  5'- -cCGGUuuCcGCGGCGGCGUG-CGGCg -3'
miRNA:   3'- ucGCCGuuGuCGUCGCCGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 239667 0.69 0.757986
Target:  5'- aGGCGGCGccguggcucccggggACGGCAGCGGUucguGUcccgucgccgccucGugGACg -3'
miRNA:   3'- -UCGCCGU---------------UGUCGUCGCCG----CA--------------CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 239452 0.69 0.757066
Target:  5'- gGGCucGGgGACAGCGGUGGCcc-GCGGCg -3'
miRNA:   3'- -UCG--CCgUUGUCGUCGCCGcacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 239260 0.68 0.793007
Target:  5'- cAGCGaCGGCGGguGUGGCGccgaGGCGAa -3'
miRNA:   3'- -UCGCcGUUGUCguCGCCGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 238459 0.66 0.892636
Target:  5'- gGGCGGCcuCGGCgGGCGGgGcgGA-GACg -3'
miRNA:   3'- -UCGCCGuuGUCG-UCGCCgCa-CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 238082 0.75 0.400143
Target:  5'- uGCaGUAGCAGCAGCcagccagcgaGGCGgUGACGGCg -3'
miRNA:   3'- uCGcCGUUGUCGUCG----------CCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 237178 0.71 0.602105
Target:  5'- --aGGCAGaCGGCGGCGGCcGUGGC-ACg -3'
miRNA:   3'- ucgCCGUU-GUCGUCGCCG-CACUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 234925 0.72 0.563029
Target:  5'- cGCGGUAcaGCAGUAGCagcaGCGagGACGACg -3'
miRNA:   3'- uCGCCGU--UGUCGUCGc---CGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 232347 0.68 0.801676
Target:  5'- gAGCaGUAGCAGCAgucGCGGCGgcaccGCGAa -3'
miRNA:   3'- -UCGcCGUUGUCGU---CGCCGCac---UGCUg -5'
14197 3' -58.5 NC_003521.1 + 228742 0.69 0.707008
Target:  5'- cGUGGUgAGCAGCGGCgugcgcaucuugucGGCGUaGAUGACc -3'
miRNA:   3'- uCGCCG-UUGUCGUCG--------------CCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 226361 0.71 0.641506
Target:  5'- uAGCGccGCGGgAGCGGCGGC-UGACGcCg -3'
miRNA:   3'- -UCGC--CGUUgUCGUCGCCGcACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 224568 0.66 0.865299
Target:  5'- cAGCGGCAGC-GCAGCcgcaGGC-UGAgGuACa -3'
miRNA:   3'- -UCGCCGUUGuCGUCG----CCGcACUgC-UG- -5'
14197 3' -58.5 NC_003521.1 + 224011 0.77 0.302827
Target:  5'- uGCGGCAGCGGCGGgccCGGCGgucggGGCGGg -3'
miRNA:   3'- uCGCCGUUGUCGUC---GCCGCa----CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 223360 0.69 0.747804
Target:  5'- cGGCGGCGgccuuggucaGCAGCGacaucGCGGCGcccCGACg -3'
miRNA:   3'- -UCGCCGU----------UGUCGU-----CGCCGCacuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 223249 0.67 0.835649
Target:  5'- cGUGGCAACGaaGGCGGaacagcugcagaucgGUGACGAUg -3'
miRNA:   3'- uCGCCGUUGUcgUCGCCg--------------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 222813 0.69 0.709897
Target:  5'- cGCGGCucggugguggaaAACGGCGucuGCGG-GUGGCGAUa -3'
miRNA:   3'- uCGCCG------------UUGUCGU---CGCCgCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 222659 0.66 0.875237
Target:  5'- cAGCGccuccacgcugcccaGCAugAGCAGCGGCucgaccucgGUG-CGGCc -3'
miRNA:   3'- -UCGC---------------CGUugUCGUCGCCG---------CACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 221957 0.68 0.775274
Target:  5'- aGGCGGUcgccguACGGCAGCauuuuagGUGACGACa -3'
miRNA:   3'- -UCGCCGu-----UGUCGUCGccg----CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 221801 0.66 0.88611
Target:  5'- cGGCgGGCAugGGCuccGuCGGCGgGGCGGg -3'
miRNA:   3'- -UCG-CCGUugUCGu--C-GCCGCaCUGCUg -5'
14197 3' -58.5 NC_003521.1 + 219466 0.69 0.757066
Target:  5'- uGCGGCAcgagcgaccAUAGCAGCGcGCugagcagcacgGUGACGGu -3'
miRNA:   3'- uCGCCGU---------UGUCGUCGC-CG-----------CACUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.