miRNA display CGI


Results 41 - 60 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 32084 0.68 0.793007
Target:  5'- cGUGGCcACGGcCAGCGccauGCGUuuGGCGGCg -3'
miRNA:   3'- uCGCCGuUGUC-GUCGC----CGCA--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 32402 0.68 0.766225
Target:  5'- gGGCGuGCGacACAGCAGCc-CGUGGCGcACg -3'
miRNA:   3'- -UCGC-CGU--UGUCGUCGccGCACUGC-UG- -5'
14197 3' -58.5 NC_003521.1 + 33919 0.69 0.756144
Target:  5'- cGCGGUGaucuucacaugguGCuGCuguGCGGCGUGcGCGGCg -3'
miRNA:   3'- uCGCCGU-------------UGuCGu--CGCCGCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 34071 0.72 0.563029
Target:  5'- -uCGGCGAUAGuCGGCGGCaGUcGGCGAUa -3'
miRNA:   3'- ucGCCGUUGUC-GUCGCCG-CA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 34201 0.71 0.641506
Target:  5'- cGUGGCccacCAG-GGCGGCGUaGACGGCg -3'
miRNA:   3'- uCGCCGuu--GUCgUCGCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 34920 0.71 0.641506
Target:  5'- aAGC-GCAGCAGUAGCGGCGca--GACc -3'
miRNA:   3'- -UCGcCGUUGUCGUCGCCGCacugCUG- -5'
14197 3' -58.5 NC_003521.1 + 36006 0.68 0.801676
Target:  5'- cGaCGGCGACGGaGGUGGCGgccccACGACc -3'
miRNA:   3'- uC-GCCGUUGUCgUCGCCGCac---UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 36403 0.7 0.680795
Target:  5'- uGGCGGCAGC-GCGG-GGCGUGgauuucGCGGu -3'
miRNA:   3'- -UCGCCGUUGuCGUCgCCGCAC------UGCUg -5'
14197 3' -58.5 NC_003521.1 + 36985 0.7 0.671009
Target:  5'- cGGCGGCGACauccgcgacgagGGCGucGCGGCGgagucagGAcCGACa -3'
miRNA:   3'- -UCGCCGUUG------------UCGU--CGCCGCa------CU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 37382 0.67 0.857966
Target:  5'- uGCGGUguucgaGGCGGCGGgGGCGcccgggccuUGuGCGACg -3'
miRNA:   3'- uCGCCG------UUGUCGUCgCCGC---------AC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 37450 0.71 0.628691
Target:  5'- --aGGCGACcGCGGCGGUuucugcggaggcguGUGugGACg -3'
miRNA:   3'- ucgCCGUUGuCGUCGCCG--------------CACugCUG- -5'
14197 3' -58.5 NC_003521.1 + 37581 0.66 0.872437
Target:  5'- cGCaGCAcCAGCAGCacGGUGUucuuucugGGCGACu -3'
miRNA:   3'- uCGcCGUuGUCGUCG--CCGCA--------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 38231 0.66 0.892636
Target:  5'- gGGCGGCcuCGGCgGGCGGgGcgGA-GACg -3'
miRNA:   3'- -UCGCCGuuGUCG-UCGCCgCa-CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 39032 0.68 0.793007
Target:  5'- cAGCGaCGGCGGguGUGGCGccgaGGCGAa -3'
miRNA:   3'- -UCGCcGUUGUCguCGCCGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 39224 0.69 0.757066
Target:  5'- gGGCucGGgGACAGCGGUGGCcc-GCGGCg -3'
miRNA:   3'- -UCG--CCgUUGUCGUCGCCGcacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 39440 0.69 0.757986
Target:  5'- aGGCGGCGccguggcucccggggACGGCAGCGGUucguGUcccgucgccgccucGugGACg -3'
miRNA:   3'- -UCGCCGU---------------UGUCGUCGCCG----CA--------------CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 40727 0.68 0.810202
Target:  5'- cGCGGCuguGACuGCAGCuGUGUGcUGGCg -3'
miRNA:   3'- uCGCCG---UUGuCGUCGcCGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 41997 0.67 0.826798
Target:  5'- aGGUcGCAGCAGCAacaCGGCG-GcACGACa -3'
miRNA:   3'- -UCGcCGUUGUCGUc--GCCGCaC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 42583 0.68 0.801676
Target:  5'- uGCGGCGuCAGCcagcuauugauAGCGcgacaGCGUGACGGu -3'
miRNA:   3'- uCGCCGUuGUCG-----------UCGC-----CGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 43443 0.7 0.658245
Target:  5'- aGGCGGCGGCGGCccuggaacucucacAGCGggccaGCGcGGCGGCc -3'
miRNA:   3'- -UCGCCGUUGUCG--------------UCGC-----CGCaCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.