miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1420 3' -52.1 NC_001335.1 + 49324 0.66 0.863634
Target:  5'- -gCGGCAaaccUCGCCgccgcaGCGUUGGCAgucCCACg -3'
miRNA:   3'- uaGUUGU----AGCGGa-----UGCAGCUGU---GGUG- -5'
1420 3' -52.1 NC_001335.1 + 22194 0.66 0.8551
Target:  5'- uUCAugAUCGCCUGCaca-GCGCCGg -3'
miRNA:   3'- uAGUugUAGCGGAUGcagcUGUGGUg -5'
1420 3' -52.1 NC_001335.1 + 46747 0.66 0.846316
Target:  5'- gGUCAGCGgaucuaCGUCUACGgCGugcccCGCCACa -3'
miRNA:   3'- -UAGUUGUa-----GCGGAUGCaGCu----GUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 12226 0.66 0.846316
Target:  5'- uUCAGaGUCGCCUgauccgucACGUCGAaggacagGCCGCc -3'
miRNA:   3'- uAGUUgUAGCGGA--------UGCAGCUg------UGGUG- -5'
1420 3' -52.1 NC_001335.1 + 2166 0.66 0.845424
Target:  5'- cUCGAUuguguguGUCGCCUGCaUCuGCGCCAUu -3'
miRNA:   3'- uAGUUG-------UAGCGGAUGcAGcUGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 13686 0.66 0.837292
Target:  5'- cUCAACG-CGCCcaacGCGUUGGCgcuugaguucgGCCACg -3'
miRNA:   3'- uAGUUGUaGCGGa---UGCAGCUG-----------UGGUG- -5'
1420 3' -52.1 NC_001335.1 + 34551 0.66 0.837292
Target:  5'- cAUCcuuCAUCGCCUGguaGUCGACAugcucuggaUCACa -3'
miRNA:   3'- -UAGuu-GUAGCGGAUg--CAGCUGU---------GGUG- -5'
1420 3' -52.1 NC_001335.1 + 9287 0.66 0.828037
Target:  5'- -aCAGCGUCugGCCggucucggaGUCGACGCCGa -3'
miRNA:   3'- uaGUUGUAG--CGGaug------CAGCUGUGGUg -5'
1420 3' -52.1 NC_001335.1 + 41165 0.66 0.828037
Target:  5'- -aCAACAUCaCCaACGUCcGCACCGa -3'
miRNA:   3'- uaGUUGUAGcGGaUGCAGcUGUGGUg -5'
1420 3' -52.1 NC_001335.1 + 12916 0.66 0.818562
Target:  5'- -cCGACGUgagCGCgaGCGacCGACACCGCg -3'
miRNA:   3'- uaGUUGUA---GCGgaUGCa-GCUGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 6865 0.67 0.808877
Target:  5'- gAUCAACGUCGCCagACGguUCGGaucgucaugccCGCCAg -3'
miRNA:   3'- -UAGUUGUAGCGGa-UGC--AGCU-----------GUGGUg -5'
1420 3' -52.1 NC_001335.1 + 22892 0.67 0.798994
Target:  5'- -aCGACAaCGCUccgacCGUCGGCAUCACc -3'
miRNA:   3'- uaGUUGUaGCGGau---GCAGCUGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 28562 0.67 0.795992
Target:  5'- uUCAGCAgcuucuccucgUCGCCUGCGggaagguggcgcacUCGGCGCUcCa -3'
miRNA:   3'- uAGUUGU-----------AGCGGAUGC--------------AGCUGUGGuG- -5'
1420 3' -52.1 NC_001335.1 + 14298 0.67 0.788925
Target:  5'- gGUCGGCuaCGUgUACGUCGgugcugcagGCACCGCu -3'
miRNA:   3'- -UAGUUGuaGCGgAUGCAGC---------UGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 25904 0.67 0.778681
Target:  5'- gGUCGACG--GCCUgACGcUCGuCGCCACg -3'
miRNA:   3'- -UAGUUGUagCGGA-UGC-AGCuGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 23345 0.67 0.778681
Target:  5'- -aCGACAUCuCCUccgACGUUGACAgcuCCACc -3'
miRNA:   3'- uaGUUGUAGcGGA---UGCAGCUGU---GGUG- -5'
1420 3' -52.1 NC_001335.1 + 27407 0.67 0.768274
Target:  5'- aGUCGGCGUCuGCCU-CGgagagguggGACGCCACc -3'
miRNA:   3'- -UAGUUGUAG-CGGAuGCag-------CUGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 34654 0.68 0.757718
Target:  5'- gGUCGAgAUCGUCUgugauccagagcAUGUCGACuACCAg -3'
miRNA:   3'- -UAGUUgUAGCGGA------------UGCAGCUG-UGGUg -5'
1420 3' -52.1 NC_001335.1 + 50471 0.69 0.70313
Target:  5'- -aCggUGUUGCCUACGUU--CACCGCg -3'
miRNA:   3'- uaGuuGUAGCGGAUGCAGcuGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 24471 0.69 0.680688
Target:  5'- uUCGACAgccggUUGcCCUGCGUCGugguCACCAg -3'
miRNA:   3'- uAGUUGU-----AGC-GGAUGCAGCu---GUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.