miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1420 3' -52.1 NC_001335.1 + 12916 0.66 0.818562
Target:  5'- -cCGACGUgagCGCgaGCGacCGACACCGCg -3'
miRNA:   3'- uaGUUGUA---GCGgaUGCa-GCUGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 41165 0.66 0.828037
Target:  5'- -aCAACAUCaCCaACGUCcGCACCGa -3'
miRNA:   3'- uaGUUGUAGcGGaUGCAGcUGUGGUg -5'
1420 3' -52.1 NC_001335.1 + 9287 0.66 0.828037
Target:  5'- -aCAGCGUCugGCCggucucggaGUCGACGCCGa -3'
miRNA:   3'- uaGUUGUAG--CGGaug------CAGCUGUGGUg -5'
1420 3' -52.1 NC_001335.1 + 13686 0.66 0.837292
Target:  5'- cUCAACG-CGCCcaacGCGUUGGCgcuugaguucgGCCACg -3'
miRNA:   3'- uAGUUGUaGCGGa---UGCAGCUG-----------UGGUG- -5'
1420 3' -52.1 NC_001335.1 + 34551 0.66 0.837292
Target:  5'- cAUCcuuCAUCGCCUGguaGUCGACAugcucuggaUCACa -3'
miRNA:   3'- -UAGuu-GUAGCGGAUg--CAGCUGU---------GGUG- -5'
1420 3' -52.1 NC_001335.1 + 2166 0.66 0.845424
Target:  5'- cUCGAUuguguguGUCGCCUGCaUCuGCGCCAUu -3'
miRNA:   3'- uAGUUG-------UAGCGGAUGcAGcUGUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 12226 0.66 0.846316
Target:  5'- uUCAGaGUCGCCUgauccgucACGUCGAaggacagGCCGCc -3'
miRNA:   3'- uAGUUgUAGCGGA--------UGCAGCUg------UGGUG- -5'
1420 3' -52.1 NC_001335.1 + 46747 0.66 0.846316
Target:  5'- gGUCAGCGgaucuaCGUCUACGgCGugcccCGCCACa -3'
miRNA:   3'- -UAGUUGUa-----GCGGAUGCaGCu----GUGGUG- -5'
1420 3' -52.1 NC_001335.1 + 22194 0.66 0.8551
Target:  5'- uUCAugAUCGCCUGCaca-GCGCCGg -3'
miRNA:   3'- uAGUugUAGCGGAUGcagcUGUGGUg -5'
1420 3' -52.1 NC_001335.1 + 49324 0.66 0.863634
Target:  5'- -gCGGCAaaccUCGCCgccgcaGCGUUGGCAgucCCACg -3'
miRNA:   3'- uaGUUGU----AGCGGa-----UGCAGCUGU---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.