miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 34657 0.67 0.909088
Target:  5'- -gGCCgCCCUGCUCCUgGGcuucUCGgagGCCu -3'
miRNA:   3'- agUGGgGGGACGAGGAgUU----AGCg--UGG- -5'
14207 3' -57.4 NC_003521.1 + 166320 0.67 0.909088
Target:  5'- -uGCCgCUCUGCUCCagCAgcugcgcgaaGUCGCGCa -3'
miRNA:   3'- agUGGgGGGACGAGGa-GU----------UAGCGUGg -5'
14207 3' -57.4 NC_003521.1 + 62523 0.67 0.90733
Target:  5'- aUCACCCCgCaGgaCCUCAucuucgucuucgaccCGCACCg -3'
miRNA:   3'- -AGUGGGGgGaCgaGGAGUua-------------GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 72757 0.67 0.903154
Target:  5'- -aGCCCCCC-GCgUCUCGA--GCACCc -3'
miRNA:   3'- agUGGGGGGaCGaGGAGUUagCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 143310 0.67 0.903154
Target:  5'- cCACCCCgagcUCUGCgaggUCUCGcucUCGUACCu -3'
miRNA:   3'- aGUGGGG----GGACGa---GGAGUu--AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 167316 0.67 0.903154
Target:  5'- gUCGCCgaCCUGCUUCUCGAa-GCAgCg -3'
miRNA:   3'- -AGUGGggGGACGAGGAGUUagCGUgG- -5'
14207 3' -57.4 NC_003521.1 + 127259 0.67 0.903154
Target:  5'- -aGCCCCaCC-GCgUCCUCc-UCGCGCUg -3'
miRNA:   3'- agUGGGG-GGaCG-AGGAGuuAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 14502 0.67 0.903154
Target:  5'- gCACCaugcacaUCUUGUUCCUCAA-CGaCACCa -3'
miRNA:   3'- aGUGGg------GGGACGAGGAGUUaGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 158049 0.67 0.897004
Target:  5'- cUCGUCCCUgUGCUCCacggcccgcCGGUCGCGCg -3'
miRNA:   3'- -AGUGGGGGgACGAGGa--------GUUAGCGUGg -5'
14207 3' -57.4 NC_003521.1 + 152344 0.67 0.897004
Target:  5'- cUACCCgCCCaccCUCUUCAAcUCGCugCa -3'
miRNA:   3'- aGUGGG-GGGac-GAGGAGUU-AGCGugG- -5'
14207 3' -57.4 NC_003521.1 + 141501 0.67 0.897004
Target:  5'- aUCACCCgucauCCCUGggCgcgaAGUCGCACCa -3'
miRNA:   3'- -AGUGGG-----GGGACgaGgag-UUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 25848 0.67 0.892573
Target:  5'- gCACCCCCCUGgccgccgccaaagucUUCCUCAAccuggucUUuaGCCu -3'
miRNA:   3'- aGUGGGGGGAC---------------GAGGAGUU-------AGcgUGG- -5'
14207 3' -57.4 NC_003521.1 + 36130 0.67 0.890641
Target:  5'- gUCACCUCgCUGC-CCUC-GUCG-ACCc -3'
miRNA:   3'- -AGUGGGGgGACGaGGAGuUAGCgUGG- -5'
14207 3' -57.4 NC_003521.1 + 75723 0.67 0.890641
Target:  5'- -aGCCgCCgCUGUUCCUCAAcagcauUCGUGCUc -3'
miRNA:   3'- agUGGgGG-GACGAGGAGUU------AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 155210 0.67 0.890641
Target:  5'- -gACCUCUCgGC-CCUCu-UCGCGCCc -3'
miRNA:   3'- agUGGGGGGaCGaGGAGuuAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 111040 0.67 0.890641
Target:  5'- gCGCCCCag-GCgacCCUCGucuucgugGUCGUACCa -3'
miRNA:   3'- aGUGGGGggaCGa--GGAGU--------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 90029 0.67 0.890641
Target:  5'- gCGCCCCCUgGCggCUCGcgcccgcccgucGUCGCGCg -3'
miRNA:   3'- aGUGGGGGGaCGagGAGU------------UAGCGUGg -5'
14207 3' -57.4 NC_003521.1 + 143260 0.67 0.886723
Target:  5'- cUACUCCuCCUccaucaucugggcugGCUUCUCGuucUCGCGCCg -3'
miRNA:   3'- aGUGGGG-GGA---------------CGAGGAGUu--AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 223647 0.67 0.88407
Target:  5'- gCGCCUgCCCaGCUgccagcgcugcgCCUCGGccUCGCGCCg -3'
miRNA:   3'- aGUGGG-GGGaCGA------------GGAGUU--AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 162367 0.67 0.88407
Target:  5'- -aGCCCCCCg--UCUUCGGUCGCucgggucugcACCu -3'
miRNA:   3'- agUGGGGGGacgAGGAGUUAGCG----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.