miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 152962 0.66 0.930636
Target:  5'- gCGCCUCgaUCUGCUCCUCcag-GCACUu -3'
miRNA:   3'- aGUGGGG--GGACGAGGAGuuagCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 168964 0.66 0.930636
Target:  5'- gUCGCUCCCgCUGCUgucgccgacgcgCgUCGGUCGCGg- -3'
miRNA:   3'- -AGUGGGGG-GACGA------------GgAGUUAGCGUgg -5'
14207 3' -57.4 NC_003521.1 + 107376 0.66 0.929642
Target:  5'- aCACCUCCa-GCUCCUCcugcgaacgGCGCCc -3'
miRNA:   3'- aGUGGGGGgaCGAGGAGuuag-----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 139335 0.66 0.925579
Target:  5'- -gGCCgCCgCUGCUcgagcaCCUCA--CGCGCCa -3'
miRNA:   3'- agUGGgGG-GACGA------GGAGUuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 167288 0.66 0.925579
Target:  5'- cCACCUCCguCUGCgacggaUCCUC-GUCGC-CCa -3'
miRNA:   3'- aGUGGGGG--GACG------AGGAGuUAGCGuGG- -5'
14207 3' -57.4 NC_003521.1 + 191163 0.66 0.922968
Target:  5'- cUCGCCCggccccucuccagaUCCUGUUCCUCGucucccucguccUCGuCGCCg -3'
miRNA:   3'- -AGUGGG--------------GGGACGAGGAGUu-----------AGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 43862 0.66 0.920302
Target:  5'- gCGCCCCggCCgGCUCCcgggCcGUCGC-CCa -3'
miRNA:   3'- aGUGGGG--GGaCGAGGa---GuUAGCGuGG- -5'
14207 3' -57.4 NC_003521.1 + 25778 0.66 0.920302
Target:  5'- aUCGCCUgCCUgGC-CCU--GUCGCACUu -3'
miRNA:   3'- -AGUGGGgGGA-CGaGGAguUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 145990 0.66 0.920302
Target:  5'- gCGCUUCCCgcugccgGCUUUugUCAAUCcGCGCCa -3'
miRNA:   3'- aGUGGGGGGa------CGAGG--AGUUAG-CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 155282 0.66 0.920302
Target:  5'- aCGCCUCUgagaugacgcggCUGUUCCUC--UCGCACg -3'
miRNA:   3'- aGUGGGGG------------GACGAGGAGuuAGCGUGg -5'
14207 3' -57.4 NC_003521.1 + 137733 0.66 0.919762
Target:  5'- cCGCCCCCUUcgcauccccagcaGCagcCCUCGcccgCGCACCc -3'
miRNA:   3'- aGUGGGGGGA-------------CGa--GGAGUua--GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 131479 0.66 0.91703
Target:  5'- gUCGgCCUCCUGCgccggcugcugccgCCUCAAcCGCcuGCCc -3'
miRNA:   3'- -AGUgGGGGGACGa-------------GGAGUUaGCG--UGG- -5'
14207 3' -57.4 NC_003521.1 + 47654 0.66 0.914804
Target:  5'- cCGCUCCCgCcgGCUCCUgAGaugcugUGCGCCg -3'
miRNA:   3'- aGUGGGGG-Ga-CGAGGAgUUa-----GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 75573 0.66 0.914804
Target:  5'- gCGCCCUCCUGUccucguccUCCUCuuccgcuUCGCguucgggcggcGCCa -3'
miRNA:   3'- aGUGGGGGGACG--------AGGAGuu-----AGCG-----------UGG- -5'
14207 3' -57.4 NC_003521.1 + 142859 0.66 0.914804
Target:  5'- gCAgCgUCCUGCUCagCAGUCGCAgCa -3'
miRNA:   3'- aGUgGgGGGACGAGgaGUUAGCGUgG- -5'
14207 3' -57.4 NC_003521.1 + 87708 0.66 0.914804
Target:  5'- -aAgCCgCCUGCUgCCgUCGcgCGCGCCc -3'
miRNA:   3'- agUgGGgGGACGA-GG-AGUuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 74050 0.66 0.914804
Target:  5'- -gACCCCgCCUG-UCC-CGAgcucaCGCGCCg -3'
miRNA:   3'- agUGGGG-GGACgAGGaGUUa----GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 56929 0.66 0.914804
Target:  5'- cCGCCUCCa-GCaCCUCGGccUCGUGCCg -3'
miRNA:   3'- aGUGGGGGgaCGaGGAGUU--AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 139990 0.67 0.911401
Target:  5'- cUCACCgaCCCUGCgUCCccgcgcaacaaucaCAGUCGCAgCCc -3'
miRNA:   3'- -AGUGGg-GGGACG-AGGa-------------GUUAGCGU-GG- -5'
14207 3' -57.4 NC_003521.1 + 135769 0.67 0.909088
Target:  5'- aUCGCCCCUgggGCUgCUCg--CGCACg -3'
miRNA:   3'- -AGUGGGGGga-CGAgGAGuuaGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.