miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 72892 0.72 0.658901
Target:  5'- gUCAgCCUCCUGaCguaccCCUCGAUCGCGgCg -3'
miRNA:   3'- -AGUgGGGGGAC-Ga----GGAGUUAGCGUgG- -5'
14207 3' -57.4 NC_003521.1 + 105021 0.71 0.67846
Target:  5'- gCGCCUCCCuccgccgcUGCUCCUCcucccgcaGCGCCa -3'
miRNA:   3'- aGUGGGGGG--------ACGAGGAGuuag----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 121358 0.71 0.688191
Target:  5'- aCGCCCCgCgcgGCUUCaCAcuGUCGCGCCu -3'
miRNA:   3'- aGUGGGGgGa--CGAGGaGU--UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 74949 0.71 0.706554
Target:  5'- cCAUCUgCCUGCcCUUCAAcuuccacUCGCACCg -3'
miRNA:   3'- aGUGGGgGGACGaGGAGUU-------AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 43716 0.71 0.707516
Target:  5'- cCACCCCCCUGUguaUUUAA-CGUGCCc -3'
miRNA:   3'- aGUGGGGGGACGag-GAGUUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 74303 0.71 0.717094
Target:  5'- aUCACCaacgaggCCgUGCUCUUCGGUCGCcugcACCc -3'
miRNA:   3'- -AGUGGg------GGgACGAGGAGUUAGCG----UGG- -5'
14207 3' -57.4 NC_003521.1 + 139021 0.71 0.726605
Target:  5'- cCGCCCCCUggGCUUCgug--CGCGCCc -3'
miRNA:   3'- aGUGGGGGGa-CGAGGaguuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 221126 0.7 0.735101
Target:  5'- aUCGCCCUugucccggccuggCCUGUcagauUCCUCGGUCucugGCGCCa -3'
miRNA:   3'- -AGUGGGG-------------GGACG-----AGGAGUUAG----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 140885 0.7 0.739792
Target:  5'- cCGCCCCCCUGCgugcgggauuacgcCCUgcgcaacgcCGAUCGCgucACCu -3'
miRNA:   3'- aGUGGGGGGACGa-------------GGA---------GUUAGCG---UGG- -5'
14207 3' -57.4 NC_003521.1 + 118142 0.7 0.742597
Target:  5'- -gGCCCCgCaGCUgucggugcugggcgCCUCGAUCGCGCUc -3'
miRNA:   3'- agUGGGGgGaCGA--------------GGAGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 144229 0.7 0.745394
Target:  5'- aCGCCUgCCUGCUCaUCAugggCGCGCa -3'
miRNA:   3'- aGUGGGgGGACGAGgAGUua--GCGUGg -5'
14207 3' -57.4 NC_003521.1 + 145607 0.7 0.763816
Target:  5'- -gGCCUCgCUGCUg--CAGUCGCACCc -3'
miRNA:   3'- agUGGGGgGACGAggaGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 31742 0.7 0.770165
Target:  5'- cCACCgCCUCcGCcgCCUCGaccggcacaucgggGUCGCGCCa -3'
miRNA:   3'- aGUGG-GGGGaCGa-GGAGU--------------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 180697 0.7 0.772869
Target:  5'- aCACCUCCUcGCUCagCAGUCGCgucACCa -3'
miRNA:   3'- aGUGGGGGGaCGAGgaGUUAGCG---UGG- -5'
14207 3' -57.4 NC_003521.1 + 171371 0.7 0.772869
Target:  5'- aUC-CUgCCCUGCgCCUCg--CGCACCu -3'
miRNA:   3'- -AGuGGgGGGACGaGGAGuuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 77350 0.7 0.780918
Target:  5'- uUCGCCCCCg-GUcucaucaUCCUCAGUCauGCGCUc -3'
miRNA:   3'- -AGUGGGGGgaCG-------AGGAGUUAG--CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 50244 0.7 0.781807
Target:  5'- cCACUCCUC-GC-CCUCGAUCaCGCCg -3'
miRNA:   3'- aGUGGGGGGaCGaGGAGUUAGcGUGG- -5'
14207 3' -57.4 NC_003521.1 + 22555 0.69 0.790621
Target:  5'- uUCGCCCUCaccgUGCUCUUCuucGUCcucuGCACCg -3'
miRNA:   3'- -AGUGGGGGg---ACGAGGAGu--UAG----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 164240 0.69 0.790621
Target:  5'- aUC-UCCCCCUGguUUCCagAAUCGUGCCg -3'
miRNA:   3'- -AGuGGGGGGAC--GAGGagUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 104143 0.69 0.794109
Target:  5'- -gGCCCgCCCUGCUCggugCUCugcggcggcggcgcgGGUCGCACg -3'
miRNA:   3'- agUGGG-GGGACGAG----GAG---------------UUAGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.