miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 47654 0.66 0.914804
Target:  5'- cCGCUCCCgCcgGCUCCUgAGaugcugUGCGCCg -3'
miRNA:   3'- aGUGGGGG-Ga-CGAGGAgUUa-----GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 50244 0.7 0.781807
Target:  5'- cCACUCCUC-GC-CCUCGAUCaCGCCg -3'
miRNA:   3'- aGUGGGGGGaCGaGGAGUUAGcGUGG- -5'
14207 3' -57.4 NC_003521.1 + 55071 0.66 0.940088
Target:  5'- -gGCCCCUaggcGCUCCgg---CGCACCc -3'
miRNA:   3'- agUGGGGGga--CGAGGaguuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 56663 0.66 0.930636
Target:  5'- gCACCUCCC-GCUCg-----CGCACCa -3'
miRNA:   3'- aGUGGGGGGaCGAGgaguuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 56929 0.66 0.914804
Target:  5'- cCGCCUCCa-GCaCCUCGGccUCGUGCCg -3'
miRNA:   3'- aGUGGGGGgaCGaGGAGUU--AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 62523 0.67 0.90733
Target:  5'- aUCACCCCgCaGgaCCUCAucuucgucuucgaccCGCACCg -3'
miRNA:   3'- -AGUGGGGgGaCgaGGAGUua-------------GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 62601 0.68 0.855765
Target:  5'- cUACCCCCCccgggaacUGCUacaaCUUCAAgaugUGCACCc -3'
miRNA:   3'- aGUGGGGGG--------ACGA----GGAGUUa---GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 66603 0.66 0.937345
Target:  5'- aCGCgCCCCUGC-CCgacccgcgcgacccCAacgugggcgcGUCGCACCu -3'
miRNA:   3'- aGUGgGGGGACGaGGa-------------GU----------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 68615 0.66 0.940088
Target:  5'- cCACCCCCgUGgaCUUCcuggGCGCCc -3'
miRNA:   3'- aGUGGGGGgACgaGGAGuuagCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 69388 1.13 0.002067
Target:  5'- gUCACCCCCCUGCUCCUCAAUCGCACCg -3'
miRNA:   3'- -AGUGGGGGGACGAGGAGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 71896 0.67 0.877291
Target:  5'- -gGCCCUgCCUGCgcCCUCc-UCGCAUCa -3'
miRNA:   3'- agUGGGG-GGACGa-GGAGuuAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 72757 0.67 0.903154
Target:  5'- -aGCCCCCC-GCgUCUCGA--GCACCc -3'
miRNA:   3'- agUGGGGGGaCGaGGAGUUagCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 72892 0.72 0.658901
Target:  5'- gUCAgCCUCCUGaCguaccCCUCGAUCGCGgCg -3'
miRNA:   3'- -AGUgGGGGGAC-Ga----GGAGUUAGCGUgG- -5'
14207 3' -57.4 NC_003521.1 + 73212 0.72 0.629431
Target:  5'- -gACCCCgagcgCCUGCggcgCCUCug-CGCGCCg -3'
miRNA:   3'- agUGGGG-----GGACGa---GGAGuuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 73922 0.66 0.93688
Target:  5'- cUCugCCCCgUGCccguguUCCUCAccaagaaccagaccaGCACCg -3'
miRNA:   3'- -AGugGGGGgACG------AGGAGUuag------------CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 73980 0.73 0.590195
Target:  5'- gCGCCaCCgCCUGCguaUCCUCAccGUCGuCGCCu -3'
miRNA:   3'- aGUGG-GG-GGACG---AGGAGU--UAGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 74050 0.66 0.914804
Target:  5'- -gACCCCgCCUG-UCC-CGAgcucaCGCGCCg -3'
miRNA:   3'- agUGGGG-GGACgAGGaGUUa----GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 74303 0.71 0.717094
Target:  5'- aUCACCaacgaggCCgUGCUCUUCGGUCGCcugcACCc -3'
miRNA:   3'- -AGUGGg------GGgACGAGGAGUUAGCG----UGG- -5'
14207 3' -57.4 NC_003521.1 + 74949 0.71 0.706554
Target:  5'- cCAUCUgCCUGCcCUUCAAcuuccacUCGCACCg -3'
miRNA:   3'- aGUGGGgGGACGaGGAGUU-------AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 75573 0.66 0.914804
Target:  5'- gCGCCCUCCUGUccucguccUCCUCuuccgcuUCGCguucgggcggcGCCa -3'
miRNA:   3'- aGUGGGGGGACG--------AGGAGuu-----AGCG-----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.