miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 5126 0.68 0.863135
Target:  5'- cUACgCCCCCUGUUCCUCuucuUCGgGg- -3'
miRNA:   3'- aGUG-GGGGGACGAGGAGuu--AGCgUgg -5'
14207 3' -57.4 NC_003521.1 + 6958 0.66 0.935472
Target:  5'- -aACCgUCCCUGUUCCUCGGaCGacaggACCg -3'
miRNA:   3'- agUGG-GGGGACGAGGAGUUaGCg----UGG- -5'
14207 3' -57.4 NC_003521.1 + 14502 0.67 0.903154
Target:  5'- gCACCaugcacaUCUUGUUCCUCAA-CGaCACCa -3'
miRNA:   3'- aGUGGg------GGGACGAGGAGUUaGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 16643 0.69 0.799303
Target:  5'- cUCAUCCCgCUGCUgCUCugcaaAGUCcCACCg -3'
miRNA:   3'- -AGUGGGGgGACGAgGAG-----UUAGcGUGG- -5'
14207 3' -57.4 NC_003521.1 + 22555 0.69 0.790621
Target:  5'- uUCGCCCUCaccgUGCUCUUCuucGUCcucuGCACCg -3'
miRNA:   3'- -AGUGGGGGg---ACGAGGAGu--UAG----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 24332 0.73 0.57072
Target:  5'- gUCGgCCUCCUGCUCUUCcaGAUCGCGu- -3'
miRNA:   3'- -AGUgGGGGGACGAGGAG--UUAGCGUgg -5'
14207 3' -57.4 NC_003521.1 + 24671 0.67 0.88273
Target:  5'- gUCACCUUCCUGUgcgcccagguggccuUCCUCugccgcggccucCGCGCCg -3'
miRNA:   3'- -AGUGGGGGGACG---------------AGGAGuua---------GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 25778 0.66 0.920302
Target:  5'- aUCGCCUgCCUgGC-CCU--GUCGCACUu -3'
miRNA:   3'- -AGUGGGgGGA-CGaGGAguUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 25848 0.67 0.892573
Target:  5'- gCACCCCCCUGgccgccgccaaagucUUCCUCAAccuggucUUuaGCCu -3'
miRNA:   3'- aGUGGGGGGAC---------------GAGGAGUU-------AGcgUGG- -5'
14207 3' -57.4 NC_003521.1 + 26255 0.72 0.619603
Target:  5'- -gACCccucgCCCCUGCUgCUCAGcUGCACCc -3'
miRNA:   3'- agUGG-----GGGGACGAgGAGUUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 26878 0.68 0.832561
Target:  5'- gCGCCCaCCC-GCgucucugCCUUAuaagacucuugGUCGCACCg -3'
miRNA:   3'- aGUGGG-GGGaCGa------GGAGU-----------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 31742 0.7 0.770165
Target:  5'- cCACCgCCUCcGCcgCCUCGaccggcacaucgggGUCGCGCCa -3'
miRNA:   3'- aGUGG-GGGGaCGa-GGAGU--------------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 34181 0.69 0.81624
Target:  5'- aCAUCCCCCUGCacgUCCau-GUCGCGa- -3'
miRNA:   3'- aGUGGGGGGACG---AGGaguUAGCGUgg -5'
14207 3' -57.4 NC_003521.1 + 34657 0.67 0.909088
Target:  5'- -gGCCgCCCUGCUCCUgGGcuucUCGgagGCCu -3'
miRNA:   3'- agUGGgGGGACGAGGAgUU----AGCg--UGG- -5'
14207 3' -57.4 NC_003521.1 + 36130 0.67 0.890641
Target:  5'- gUCACCUCgCUGC-CCUC-GUCG-ACCc -3'
miRNA:   3'- -AGUGGGGgGACGaGGAGuUAGCgUGG- -5'
14207 3' -57.4 NC_003521.1 + 42537 0.68 0.84821
Target:  5'- -aGCCCCCCaGCggUCCUCcg-CGaCGCCc -3'
miRNA:   3'- agUGGGGGGaCG--AGGAGuuaGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 43546 0.68 0.862406
Target:  5'- cCGCCCUCCcGCUCCcCGccgccggcgccgcGUCaaGCACCg -3'
miRNA:   3'- aGUGGGGGGaCGAGGaGU-------------UAG--CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 43716 0.71 0.707516
Target:  5'- cCACCCCCCUGUguaUUUAA-CGUGCCc -3'
miRNA:   3'- aGUGGGGGGACGag-GAGUUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 43752 0.68 0.863135
Target:  5'- gCGCuCCUCCUGCUCgaCGAccUUGCAgCCg -3'
miRNA:   3'- aGUG-GGGGGACGAGgaGUU--AGCGU-GG- -5'
14207 3' -57.4 NC_003521.1 + 43862 0.66 0.920302
Target:  5'- gCGCCCCggCCgGCUCCcgggCcGUCGC-CCa -3'
miRNA:   3'- aGUGGGG--GGaCGAGGa---GuUAGCGuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.