miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 50244 0.7 0.781807
Target:  5'- cCACUCCUC-GC-CCUCGAUCaCGCCg -3'
miRNA:   3'- aGUGGGGGGaCGaGGAGUUAGcGUGG- -5'
14207 3' -57.4 NC_003521.1 + 87127 0.72 0.658901
Target:  5'- cCACCUCgucgcgaCUGCUCUUCAugCGCACCu -3'
miRNA:   3'- aGUGGGGg------GACGAGGAGUuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 74949 0.71 0.706554
Target:  5'- cCAUCUgCCUGCcCUUCAAcuuccacUCGCACCg -3'
miRNA:   3'- aGUGGGgGGACGaGGAGUU-------AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 43716 0.71 0.707516
Target:  5'- cCACCCCCCUGUguaUUUAA-CGUGCCc -3'
miRNA:   3'- aGUGGGGGGACGag-GAGUUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 74303 0.71 0.717094
Target:  5'- aUCACCaacgaggCCgUGCUCUUCGGUCGCcugcACCc -3'
miRNA:   3'- -AGUGGg------GGgACGAGGAGUUAGCG----UGG- -5'
14207 3' -57.4 NC_003521.1 + 140885 0.7 0.739792
Target:  5'- cCGCCCCCCUGCgugcgggauuacgcCCUgcgcaacgcCGAUCGCgucACCu -3'
miRNA:   3'- aGUGGGGGGACGa-------------GGA---------GUUAGCG---UGG- -5'
14207 3' -57.4 NC_003521.1 + 144229 0.7 0.745394
Target:  5'- aCGCCUgCCUGCUCaUCAugggCGCGCa -3'
miRNA:   3'- aGUGGGgGGACGAGgAGUua--GCGUGg -5'
14207 3' -57.4 NC_003521.1 + 145607 0.7 0.763816
Target:  5'- -gGCCUCgCUGCUg--CAGUCGCACCc -3'
miRNA:   3'- agUGGGGgGACGAggaGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 31742 0.7 0.770165
Target:  5'- cCACCgCCUCcGCcgCCUCGaccggcacaucgggGUCGCGCCa -3'
miRNA:   3'- aGUGG-GGGGaCGa-GGAGU--------------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 151183 0.72 0.648105
Target:  5'- -uGCCgUCCUGCUCCUCGGcCGCgacggucACCa -3'
miRNA:   3'- agUGGgGGGACGAGGAGUUaGCG-------UGG- -5'
14207 3' -57.4 NC_003521.1 + 92437 0.72 0.639262
Target:  5'- cUCACCCCCCag--CCUCcc-CGCACCc -3'
miRNA:   3'- -AGUGGGGGGacgaGGAGuuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 73212 0.72 0.629431
Target:  5'- -gACCCCgagcgCCUGCggcgCCUCug-CGCGCCg -3'
miRNA:   3'- agUGGGG-----GGACGa---GGAGuuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 146220 0.79 0.315675
Target:  5'- aCAUCCCCCUGCUCaUCA-UCGuCACCc -3'
miRNA:   3'- aGUGGGGGGACGAGgAGUuAGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 115081 0.77 0.407103
Target:  5'- gUCGCCCagaaaCCCUGCUCCUgCGccGUCGcCGCCc -3'
miRNA:   3'- -AGUGGG-----GGGACGAGGA-GU--UAGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 92974 0.74 0.522827
Target:  5'- -gGCCCCCCaGCaaCCcCGAUCGUACCa -3'
miRNA:   3'- agUGGGGGGaCGa-GGaGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 142982 0.74 0.532294
Target:  5'- gCACCCCUCUcugucGCaCCggCGGUCGCGCCg -3'
miRNA:   3'- aGUGGGGGGA-----CGaGGa-GUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 142214 0.74 0.56104
Target:  5'- cUCGCCCUCCUcGCcauggCCUCG-UCGCugCg -3'
miRNA:   3'- -AGUGGGGGGA-CGa----GGAGUuAGCGugG- -5'
14207 3' -57.4 NC_003521.1 + 224067 0.73 0.57072
Target:  5'- gUCACCCUCCUcgucCUCCggcgggCGcgCGCGCCg -3'
miRNA:   3'- -AGUGGGGGGAc---GAGGa-----GUuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 154365 0.73 0.599978
Target:  5'- cUCGCCCgacCUCUGUcgcgUCCUCGGUCGCcgcuGCCg -3'
miRNA:   3'- -AGUGGG---GGGACG----AGGAGUUAGCG----UGG- -5'
14207 3' -57.4 NC_003521.1 + 85433 0.72 0.619603
Target:  5'- -aGCCCCCC-GCcggCCUCGucGUCcGCGCCg -3'
miRNA:   3'- agUGGGGGGaCGa--GGAGU--UAG-CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.