miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 69388 1.13 0.002067
Target:  5'- gUCACCCCCCUGCUCCUCAAUCGCACCg -3'
miRNA:   3'- -AGUGGGGGGACGAGGAGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 104143 0.69 0.794109
Target:  5'- -gGCCCgCCCUGCUCggugCUCugcggcggcggcgcgGGUCGCACg -3'
miRNA:   3'- agUGGG-GGGACGAG----GAG---------------UUAGCGUGg -5'
14207 3' -57.4 NC_003521.1 + 141838 0.69 0.807845
Target:  5'- gUACCuCCCCUGacgCCUCcuAAagGCGCCg -3'
miRNA:   3'- aGUGG-GGGGACga-GGAG--UUagCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 197197 0.66 0.940088
Target:  5'- -gGCCgCCgCCUcCUCCUCGuccucguugucGUCGCGCUc -3'
miRNA:   3'- agUGG-GG-GGAcGAGGAGU-----------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 26255 0.72 0.619603
Target:  5'- -gACCccucgCCCCUGCUgCUCAGcUGCACCc -3'
miRNA:   3'- agUGG-----GGGGACGAgGAGUUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 72892 0.72 0.658901
Target:  5'- gUCAgCCUCCUGaCguaccCCUCGAUCGCGgCg -3'
miRNA:   3'- -AGUgGGGGGAC-Ga----GGAGUUAGCGUgG- -5'
14207 3' -57.4 NC_003521.1 + 212565 0.72 0.658901
Target:  5'- aUCGCCgCCgUGUUCCUC--UCgGCGCCg -3'
miRNA:   3'- -AGUGGgGGgACGAGGAGuuAG-CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 105021 0.71 0.67846
Target:  5'- gCGCCUCCCuccgccgcUGCUCCUCcucccgcaGCGCCa -3'
miRNA:   3'- aGUGGGGGG--------ACGAGGAGuuag----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 221126 0.7 0.735101
Target:  5'- aUCGCCCUugucccggccuggCCUGUcagauUCCUCGGUCucugGCGCCa -3'
miRNA:   3'- -AGUGGGG-------------GGACG-----AGGAGUUAG----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 22555 0.69 0.790621
Target:  5'- uUCGCCCUCaccgUGCUCUUCuucGUCcucuGCACCg -3'
miRNA:   3'- -AGUGGGGGg---ACGAGGAGu--UAG----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 171371 0.7 0.772869
Target:  5'- aUC-CUgCCCUGCgCCUCg--CGCACCu -3'
miRNA:   3'- -AGuGGgGGGACGaGGAGuuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 139021 0.71 0.726605
Target:  5'- cCGCCCCCUggGCUUCgug--CGCGCCc -3'
miRNA:   3'- aGUGGGGGGa-CGAGGaguuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 148828 0.74 0.551406
Target:  5'- cUCGCCgCUCCcGCUCCgu--UCGCGCCg -3'
miRNA:   3'- -AGUGG-GGGGaCGAGGaguuAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 180697 0.7 0.772869
Target:  5'- aCACCUCCUcGCUCagCAGUCGCgucACCa -3'
miRNA:   3'- aGUGGGGGGaCGAGgaGUUAGCG---UGG- -5'
14207 3' -57.4 NC_003521.1 + 24332 0.73 0.57072
Target:  5'- gUCGgCCUCCUGCUCUUCcaGAUCGCGu- -3'
miRNA:   3'- -AGUgGGGGGACGAGGAG--UUAGCGUgg -5'
14207 3' -57.4 NC_003521.1 + 121358 0.71 0.688191
Target:  5'- aCGCCCCgCgcgGCUUCaCAcuGUCGCGCCu -3'
miRNA:   3'- aGUGGGGgGa--CGAGGaGU--UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 77350 0.7 0.780918
Target:  5'- uUCGCCCCCg-GUcucaucaUCCUCAGUCauGCGCUc -3'
miRNA:   3'- -AGUGGGGGgaCG-------AGGAGUUAG--CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 158256 0.69 0.805297
Target:  5'- cCACCCCCUcugUGCcaggugggucuucuUCCUCcGGUCGUACg -3'
miRNA:   3'- aGUGGGGGG---ACG--------------AGGAG-UUAGCGUGg -5'
14207 3' -57.4 NC_003521.1 + 73980 0.73 0.590195
Target:  5'- gCGCCaCCgCCUGCguaUCCUCAccGUCGuCGCCu -3'
miRNA:   3'- aGUGG-GG-GGACG---AGGAGU--UAGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 180243 0.72 0.658901
Target:  5'- -gGCCUCgaaCUGCUCCUCGGU-GUACCg -3'
miRNA:   3'- agUGGGGg--GACGAGGAGUUAgCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.