miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 142859 0.66 0.914804
Target:  5'- gCAgCgUCCUGCUCagCAGUCGCAgCa -3'
miRNA:   3'- aGUgGgGGGACGAGgaGUUAGCGUgG- -5'
14207 3' -57.4 NC_003521.1 + 73922 0.66 0.93688
Target:  5'- cUCugCCCCgUGCccguguUCCUCAccaagaaccagaccaGCACCg -3'
miRNA:   3'- -AGugGGGGgACG------AGGAGUuag------------CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 216576 0.66 0.940088
Target:  5'- aUAUCgCUCCUGUUCCUC-GUCGCuCUc -3'
miRNA:   3'- aGUGG-GGGGACGAGGAGuUAGCGuGG- -5'
14207 3' -57.4 NC_003521.1 + 153689 0.66 0.930636
Target:  5'- cCGCCCaacaCCUcgcGCUCCUUGGgacgCGCGuCCa -3'
miRNA:   3'- aGUGGGg---GGA---CGAGGAGUUa---GCGU-GG- -5'
14207 3' -57.4 NC_003521.1 + 74050 0.66 0.914804
Target:  5'- -gACCCCgCCUG-UCC-CGAgcucaCGCGCCg -3'
miRNA:   3'- agUGGGG-GGACgAGGaGUUa----GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 152962 0.66 0.930636
Target:  5'- gCGCCUCgaUCUGCUCCUCcag-GCACUu -3'
miRNA:   3'- aGUGGGG--GGACGAGGAGuuagCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 66603 0.66 0.937345
Target:  5'- aCGCgCCCCUGC-CCgacccgcgcgacccCAacgugggcgcGUCGCACCu -3'
miRNA:   3'- aGUGgGGGGACGaGGa-------------GU----------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 55071 0.66 0.940088
Target:  5'- -gGCCCCUaggcGCUCCgg---CGCACCc -3'
miRNA:   3'- agUGGGGGga--CGAGGaguuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 211090 0.66 0.930636
Target:  5'- --uCCUUCCUGCcUgUCcGUCGCGCCg -3'
miRNA:   3'- aguGGGGGGACGaGgAGuUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 197197 0.66 0.940088
Target:  5'- -gGCCgCCgCCUcCUCCUCGuccucguugucGUCGCGCUc -3'
miRNA:   3'- agUGG-GG-GGAcGAGGAGU-----------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 56663 0.66 0.930636
Target:  5'- gCACCUCCC-GCUCg-----CGCACCa -3'
miRNA:   3'- aGUGGGGGGaCGAGgaguuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 145990 0.66 0.920302
Target:  5'- gCGCUUCCCgcugccgGCUUUugUCAAUCcGCGCCa -3'
miRNA:   3'- aGUGGGGGGa------CGAGG--AGUUAG-CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 131479 0.66 0.91703
Target:  5'- gUCGgCCUCCUGCgccggcugcugccgCCUCAAcCGCcuGCCc -3'
miRNA:   3'- -AGUgGGGGGACGa-------------GGAGUUaGCG--UGG- -5'
14207 3' -57.4 NC_003521.1 + 56929 0.66 0.914804
Target:  5'- cCGCCUCCa-GCaCCUCGGccUCGUGCCg -3'
miRNA:   3'- aGUGGGGGgaCGaGGAGUU--AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 47654 0.66 0.914804
Target:  5'- cCGCUCCCgCcgGCUCCUgAGaugcugUGCGCCg -3'
miRNA:   3'- aGUGGGGG-Ga-CGAGGAgUUa-----GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 43862 0.66 0.920302
Target:  5'- gCGCCCCggCCgGCUCCcgggCcGUCGC-CCa -3'
miRNA:   3'- aGUGGGG--GGaCGAGGa---GuUAGCGuGG- -5'
14207 3' -57.4 NC_003521.1 + 155282 0.66 0.920302
Target:  5'- aCGCCUCUgagaugacgcggCUGUUCCUC--UCGCACg -3'
miRNA:   3'- aGUGGGGG------------GACGAGGAGuuAGCGUGg -5'
14207 3' -57.4 NC_003521.1 + 167288 0.66 0.925579
Target:  5'- cCACCUCCguCUGCgacggaUCCUC-GUCGC-CCa -3'
miRNA:   3'- aGUGGGGG--GACG------AGGAGuUAGCGuGG- -5'
14207 3' -57.4 NC_003521.1 + 168964 0.66 0.930636
Target:  5'- gUCGCUCCCgCUGCUgucgccgacgcgCgUCGGUCGCGg- -3'
miRNA:   3'- -AGUGGGGG-GACGA------------GgAGUUAGCGUgg -5'
14207 3' -57.4 NC_003521.1 + 191163 0.66 0.922968
Target:  5'- cUCGCCCggccccucuccagaUCCUGUUCCUCGucucccucguccUCGuCGCCg -3'
miRNA:   3'- -AGUGGG--------------GGGACGAGGAGUu-----------AGC-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.