miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 69388 1.13 0.002067
Target:  5'- gUCACCCCCCUGCUCCUCAAUCGCACCg -3'
miRNA:   3'- -AGUGGGGGGACGAGGAGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 83777 0.81 0.224347
Target:  5'- gCGCCCCCCgccgcGCUCCUCcGAcCGCGCCc -3'
miRNA:   3'- aGUGGGGGGa----CGAGGAG-UUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 146220 0.79 0.315675
Target:  5'- aCAUCCCCCUGCUCaUCA-UCGuCACCc -3'
miRNA:   3'- aGUGGGGGGACGAGgAGUuAGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 115081 0.77 0.407103
Target:  5'- gUCGCCCagaaaCCCUGCUCCUgCGccGUCGcCGCCc -3'
miRNA:   3'- -AGUGGG-----GGGACGAGGA-GU--UAGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 92974 0.74 0.522827
Target:  5'- -gGCCCCCCaGCaaCCcCGAUCGUACCa -3'
miRNA:   3'- agUGGGGGGaCGa-GGaGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 142982 0.74 0.532294
Target:  5'- gCACCCCUCUcugucGCaCCggCGGUCGCGCCg -3'
miRNA:   3'- aGUGGGGGGA-----CGaGGa-GUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 148828 0.74 0.551406
Target:  5'- cUCGCCgCUCCcGCUCCgu--UCGCGCCg -3'
miRNA:   3'- -AGUGG-GGGGaCGAGGaguuAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 142214 0.74 0.56104
Target:  5'- cUCGCCCUCCUcGCcauggCCUCG-UCGCugCg -3'
miRNA:   3'- -AGUGGGGGGA-CGa----GGAGUuAGCGugG- -5'
14207 3' -57.4 NC_003521.1 + 224067 0.73 0.57072
Target:  5'- gUCACCCUCCUcgucCUCCggcgggCGcgCGCGCCg -3'
miRNA:   3'- -AGUGGGGGGAc---GAGGa-----GUuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 24332 0.73 0.57072
Target:  5'- gUCGgCCUCCUGCUCUUCcaGAUCGCGu- -3'
miRNA:   3'- -AGUgGGGGGACGAGGAG--UUAGCGUgg -5'
14207 3' -57.4 NC_003521.1 + 73980 0.73 0.590195
Target:  5'- gCGCCaCCgCCUGCguaUCCUCAccGUCGuCGCCu -3'
miRNA:   3'- aGUGG-GG-GGACG---AGGAGU--UAGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 154365 0.73 0.599978
Target:  5'- cUCGCCCgacCUCUGUcgcgUCCUCGGUCGCcgcuGCCg -3'
miRNA:   3'- -AGUGGG---GGGACG----AGGAGUUAGCG----UGG- -5'
14207 3' -57.4 NC_003521.1 + 85433 0.72 0.619603
Target:  5'- -aGCCCCCC-GCcggCCUCGucGUCcGCGCCg -3'
miRNA:   3'- agUGGGGGGaCGa--GGAGU--UAG-CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 26255 0.72 0.619603
Target:  5'- -gACCccucgCCCCUGCUgCUCAGcUGCACCc -3'
miRNA:   3'- agUGG-----GGGGACGAgGAGUUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 73212 0.72 0.629431
Target:  5'- -gACCCCgagcgCCUGCggcgCCUCug-CGCGCCg -3'
miRNA:   3'- agUGGGG-----GGACGa---GGAGuuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 92437 0.72 0.639262
Target:  5'- cUCACCCCCCag--CCUCcc-CGCACCc -3'
miRNA:   3'- -AGUGGGGGGacgaGGAGuuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 151183 0.72 0.648105
Target:  5'- -uGCCgUCCUGCUCCUCGGcCGCgacggucACCa -3'
miRNA:   3'- agUGGgGGGACGAGGAGUUaGCG-------UGG- -5'
14207 3' -57.4 NC_003521.1 + 72892 0.72 0.658901
Target:  5'- gUCAgCCUCCUGaCguaccCCUCGAUCGCGgCg -3'
miRNA:   3'- -AGUgGGGGGAC-Ga----GGAGUUAGCGUgG- -5'
14207 3' -57.4 NC_003521.1 + 180243 0.72 0.658901
Target:  5'- -gGCCUCgaaCUGCUCCUCGGU-GUACCg -3'
miRNA:   3'- agUGGGGg--GACGAGGAGUUAgCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 87127 0.72 0.658901
Target:  5'- cCACCUCgucgcgaCUGCUCUUCAugCGCACCu -3'
miRNA:   3'- aGUGGGGg------GACGAGGAGUuaGCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.