miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 3' -57.4 NC_003521.1 + 226967 0.66 0.935472
Target:  5'- uUCACCCCCaucCUCCccucCGGUCGuCACa -3'
miRNA:   3'- -AGUGGGGGgacGAGGa---GUUAGC-GUGg -5'
14207 3' -57.4 NC_003521.1 + 224067 0.73 0.57072
Target:  5'- gUCACCCUCCUcgucCUCCggcgggCGcgCGCGCCg -3'
miRNA:   3'- -AGUGGGGGGAc---GAGGa-----GUuaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 223647 0.67 0.88407
Target:  5'- gCGCCUgCCCaGCUgccagcgcugcgCCUCGGccUCGCGCCg -3'
miRNA:   3'- aGUGGG-GGGaCGA------------GGAGUU--AGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 223559 0.66 0.930636
Target:  5'- aCACgCCgauaCUGCUCCUCu-UC-CACCg -3'
miRNA:   3'- aGUGgGGg---GACGAGGAGuuAGcGUGG- -5'
14207 3' -57.4 NC_003521.1 + 221536 0.68 0.840473
Target:  5'- gUCGuCCCCCCUcccuccCUCCuUCAGUCGU-CCa -3'
miRNA:   3'- -AGU-GGGGGGAc-----GAGG-AGUUAGCGuGG- -5'
14207 3' -57.4 NC_003521.1 + 221126 0.7 0.735101
Target:  5'- aUCGCCCUugucccggccuggCCUGUcagauUCCUCGGUCucugGCGCCa -3'
miRNA:   3'- -AGUGGGG-------------GGACG-----AGGAGUUAG----CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 216576 0.66 0.940088
Target:  5'- aUAUCgCUCCUGUUCCUC-GUCGCuCUc -3'
miRNA:   3'- aGUGG-GGGGACGAGGAGuUAGCGuGG- -5'
14207 3' -57.4 NC_003521.1 + 213123 0.66 0.930636
Target:  5'- cCACUCUCCUGUgguuucucUCCUCGugaucuccgCGCGCUc -3'
miRNA:   3'- aGUGGGGGGACG--------AGGAGUua-------GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 212565 0.72 0.658901
Target:  5'- aUCGCCgCCgUGUUCCUC--UCgGCGCCg -3'
miRNA:   3'- -AGUGGgGGgACGAGGAGuuAG-CGUGG- -5'
14207 3' -57.4 NC_003521.1 + 211090 0.66 0.930636
Target:  5'- --uCCUUCCUGCcUgUCcGUCGCGCCg -3'
miRNA:   3'- aguGGGGGGACGaGgAGuUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 209795 0.68 0.854269
Target:  5'- cCACCCCCCaccaccacgaacGCgUCCUCGccgGCGCCg -3'
miRNA:   3'- aGUGGGGGGa-----------CG-AGGAGUuagCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 208702 0.67 0.877291
Target:  5'- gCGCCCgcuaCCUGC-CCgagaUCAGcCGCGCCg -3'
miRNA:   3'- aGUGGGg---GGACGaGG----AGUUaGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 207842 0.66 0.935472
Target:  5'- uUCAUCCgCCaggGCUCCUUcuGGUuccguugucCGCGCCg -3'
miRNA:   3'- -AGUGGGgGGa--CGAGGAG--UUA---------GCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 204049 0.68 0.840473
Target:  5'- gCGCgUggCCCUGCcagucgCCgCAGUCGCACCa -3'
miRNA:   3'- aGUGgG--GGGACGa-----GGaGUUAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 197197 0.66 0.940088
Target:  5'- -gGCCgCCgCCUcCUCCUCGuccucguugucGUCGCGCUc -3'
miRNA:   3'- agUGG-GG-GGAcGAGGAGU-----------UAGCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 191745 0.69 0.81624
Target:  5'- aUCGCCCCCCg--UCCgaCGGUC-CACCg -3'
miRNA:   3'- -AGUGGGGGGacgAGGa-GUUAGcGUGG- -5'
14207 3' -57.4 NC_003521.1 + 191163 0.66 0.922968
Target:  5'- cUCGCCCggccccucuccagaUCCUGUUCCUCGucucccucguccUCGuCGCCg -3'
miRNA:   3'- -AGUGGG--------------GGGACGAGGAGUu-----------AGC-GUGG- -5'
14207 3' -57.4 NC_003521.1 + 187404 0.68 0.855765
Target:  5'- -gACCUUCC-GCUgCUCGGUgGCGCCc -3'
miRNA:   3'- agUGGGGGGaCGAgGAGUUAgCGUGG- -5'
14207 3' -57.4 NC_003521.1 + 183548 0.66 0.940088
Target:  5'- gCACCgaCCUGCUgCUgGGUCGCuucuacaucaagGCCa -3'
miRNA:   3'- aGUGGggGGACGAgGAgUUAGCG------------UGG- -5'
14207 3' -57.4 NC_003521.1 + 181146 0.68 0.832561
Target:  5'- -gGCUCCaCCUggcgucugaGCUCCUCcaggCGCGCCa -3'
miRNA:   3'- agUGGGG-GGA---------CGAGGAGuua-GCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.