miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 3' -59.3 NC_003521.1 + 2950 0.68 0.755221
Target:  5'- uGUGGCCUGGAcauaGAgcGCCCUCUCCcggUACc -3'
miRNA:   3'- -CGCCGGGCCUa---CU--UGGGGGAGG---AUGu -5'
14209 3' -59.3 NC_003521.1 + 4141 0.66 0.882853
Target:  5'- aGCGGgCCGGcgGcucuCCCCUUCCc--- -3'
miRNA:   3'- -CGCCgGGCCuaCuu--GGGGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 4373 0.68 0.794063
Target:  5'- cGCGGCCCGcgucccgcucGcucacucacccgcucGUGGACCUCCUCCUc-- -3'
miRNA:   3'- -CGCCGGGC----------C---------------UACUUGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 5179 0.66 0.876143
Target:  5'- gGCGGCgaGGGUGca-CCCCUCCc--- -3'
miRNA:   3'- -CGCCGggCCUACuugGGGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 11937 0.68 0.781948
Target:  5'- -gGGCCCGGcUGGugCUCCUgCUGgGa -3'
miRNA:   3'- cgCCGGGCCuACUugGGGGAgGAUgU- -5'
14209 3' -59.3 NC_003521.1 + 23941 0.68 0.764238
Target:  5'- gGUGGCCUGGAUGccuggauguCCCgCUCC-ACGg -3'
miRNA:   3'- -CGCCGGGCCUACuu-------GGGgGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 32744 0.68 0.790627
Target:  5'- aGCGGgCgCGGAgGAACCUCCUUCUc-- -3'
miRNA:   3'- -CGCCgG-GCCUaCUUGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 35622 0.66 0.876143
Target:  5'- cCGGCCCuGGAcGGGCCUCCggacCCU-CAu -3'
miRNA:   3'- cGCCGGG-CCUaCUUGGGGGa---GGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 40926 0.74 0.472203
Target:  5'- gGCGGCCCGGggGAGCgCCaUCUUAUc -3'
miRNA:   3'- -CGCCGGGCCuaCUUGgGGgAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 44540 0.67 0.82399
Target:  5'- aGCGGCCCGGcacgcgcucacAUGAggACgCCCUCa-ACGa -3'
miRNA:   3'- -CGCCGGGCC-----------UACU--UGgGGGAGgaUGU- -5'
14209 3' -59.3 NC_003521.1 + 47577 0.69 0.746107
Target:  5'- aGCgGGCCaCGGuggcggucgGAGuCCUCCUCCUGCu -3'
miRNA:   3'- -CG-CCGG-GCCua-------CUU-GGGGGAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 49813 0.7 0.689821
Target:  5'- -aGGCCUGGAUGAggcuGCCCacguCCaCCUGCGc -3'
miRNA:   3'- cgCCGGGCCUACU----UGGG----GGaGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 54503 0.7 0.64166
Target:  5'- gGCGGCCCGGcGUGGACCaggaUCUGCAc -3'
miRNA:   3'- -CGCCGGGCC-UACUUGGgggaGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 62795 0.68 0.770487
Target:  5'- -gGGCCCGGcgucuuugacgaccGUGGccGCCUCCgUCCUACc -3'
miRNA:   3'- cgCCGGGCC--------------UACU--UGGGGG-AGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 64770 0.69 0.736904
Target:  5'- cGCGGCaCCGGgcGAuCCCaagcgCCUGCAg -3'
miRNA:   3'- -CGCCG-GGCCuaCUuGGGgga--GGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 67855 1.01 0.009191
Target:  5'- gGCGGCCCGG-UGAACCCCCUCCUACAc -3'
miRNA:   3'- -CGCCGGGCCuACUUGGGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 71893 0.66 0.876143
Target:  5'- gGCGGCCCuGccu-GCgCCCUCCUcGCAu -3'
miRNA:   3'- -CGCCGGGcCuacuUGgGGGAGGA-UGU- -5'
14209 3' -59.3 NC_003521.1 + 72982 0.72 0.555069
Target:  5'- aGCGGCCgCGGG-GGGCCuggCCgCUCCUGCu -3'
miRNA:   3'- -CGCCGG-GCCUaCUUGG---GG-GAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 73003 0.66 0.889364
Target:  5'- uCGuGCCCGGggGggUCCagCUCCUGu- -3'
miRNA:   3'- cGC-CGGGCCuaCuuGGGg-GAGGAUgu -5'
14209 3' -59.3 NC_003521.1 + 75548 0.69 0.746107
Target:  5'- aGCGGCgCCGGcgGcggcuacgccAGCgCCCUCCUGu- -3'
miRNA:   3'- -CGCCG-GGCCuaC----------UUGgGGGAGGAUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.