miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 3' -59.3 NC_003521.1 + 67855 1.01 0.009191
Target:  5'- gGCGGCCCGG-UGAACCCCCUCCUACAc -3'
miRNA:   3'- -CGCCGGGCCuACUUGGGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 149454 0.74 0.437403
Target:  5'- -gGGCCCGGGguucGGCCCCCUCCc--- -3'
miRNA:   3'- cgCCGGGCCUac--UUGGGGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 124815 0.74 0.472203
Target:  5'- cGCGGCCUGGA--GACgCUgCUCCUGCGc -3'
miRNA:   3'- -CGCCGGGCCUacUUG-GGgGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 40926 0.74 0.472203
Target:  5'- gGCGGCCCGGggGAGCgCCaUCUUAUc -3'
miRNA:   3'- -CGCCGGGCCuaCUUGgGGgAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 137347 0.74 0.472203
Target:  5'- cGCgGGCCCGcugGAGCCgCCCUCCcGCAu -3'
miRNA:   3'- -CG-CCGGGCcuaCUUGG-GGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 161935 0.73 0.526856
Target:  5'- -aGGCCCGcGUGGACCCCCUgacgcgCCUGg- -3'
miRNA:   3'- cgCCGGGCcUACUUGGGGGA------GGAUgu -5'
14209 3' -59.3 NC_003521.1 + 90136 0.72 0.536205
Target:  5'- gGCGGaucccagcCCCGGAuacUGAuacGCCCCCUUCUugAa -3'
miRNA:   3'- -CGCC--------GGGCCU---ACU---UGGGGGAGGAugU- -5'
14209 3' -59.3 NC_003521.1 + 72982 0.72 0.555069
Target:  5'- aGCGGCCgCGGG-GGGCCuggCCgCUCCUGCu -3'
miRNA:   3'- -CGCCGG-GCCUaCUUGG---GG-GAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 106162 0.71 0.622299
Target:  5'- aCGGCCUGGAgc-ACUUCUUCCUGCGc -3'
miRNA:   3'- cGCCGGGCCUacuUGGGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 178588 0.7 0.64166
Target:  5'- cGCGcGUCCaGccGGGCgCCCUCCUGCAg -3'
miRNA:   3'- -CGC-CGGGcCuaCUUGgGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 54503 0.7 0.64166
Target:  5'- gGCGGCCCGGcGUGGACCaggaUCUGCAc -3'
miRNA:   3'- -CGCCGGGCC-UACUUGGgggaGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 141311 0.7 0.660994
Target:  5'- gGCGGCgccCCGGA---GCCCUCUUCUGCu -3'
miRNA:   3'- -CGCCG---GGCCUacuUGGGGGAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 49813 0.7 0.689821
Target:  5'- -aGGCCUGGAUGAggcuGCCCacguCCaCCUGCGc -3'
miRNA:   3'- cgCCGGGCCUACU----UGGG----GGaGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 173665 0.7 0.689821
Target:  5'- cGCGGgaCCCaGGGguacgGAGCCCCCgUCCUguGCGg -3'
miRNA:   3'- -CGCC--GGG-CCUa----CUUGGGGG-AGGA--UGU- -5'
14209 3' -59.3 NC_003521.1 + 128206 0.69 0.708837
Target:  5'- cUGGgCUGGGUguaGAGCCCCCUCUUGa- -3'
miRNA:   3'- cGCCgGGCCUA---CUUGGGGGAGGAUgu -5'
14209 3' -59.3 NC_003521.1 + 138850 0.69 0.718261
Target:  5'- uGCGGCCa-GAUGGGCUgcaCCUUCUGCGu -3'
miRNA:   3'- -CGCCGGgcCUACUUGGg--GGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 202653 0.69 0.72762
Target:  5'- aGCGGCCCcGcugGGACgCCCUgcaCCUACAc -3'
miRNA:   3'- -CGCCGGGcCua-CUUGgGGGA---GGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 92103 0.69 0.736904
Target:  5'- gGCGGugcCCCGGGUcgGAACCCCCgggUGCGg -3'
miRNA:   3'- -CGCC---GGGCCUA--CUUGGGGGaggAUGU- -5'
14209 3' -59.3 NC_003521.1 + 64770 0.69 0.736904
Target:  5'- cGCGGCaCCGGgcGAuCCCaagcgCCUGCAg -3'
miRNA:   3'- -CGCCG-GGCCuaCUuGGGgga--GGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 47577 0.69 0.746107
Target:  5'- aGCgGGCCaCGGuggcggucgGAGuCCUCCUCCUGCu -3'
miRNA:   3'- -CG-CCGG-GCCua-------CUU-GGGGGAGGAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.