Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14209 | 3' | -59.3 | NC_003521.1 | + | 75548 | 0.69 | 0.746107 |
Target: 5'- aGCGGCgCCGGcgGcggcuacgccAGCgCCCUCCUGu- -3' miRNA: 3'- -CGCCG-GGCCuaC----------UUGgGGGAGGAUgu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 2950 | 0.68 | 0.755221 |
Target: 5'- uGUGGCCUGGAcauaGAgcGCCCUCUCCcggUACc -3' miRNA: 3'- -CGCCGGGCCUa---CU--UGGGGGAGG---AUGu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 203433 | 0.68 | 0.755221 |
Target: 5'- -aGGCCCGGGc--GCCCCCgccgCCUcgaACAc -3' miRNA: 3'- cgCCGGGCCUacuUGGGGGa---GGA---UGU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 23941 | 0.68 | 0.764238 |
Target: 5'- gGUGGCCUGGAUGccuggauguCCCgCUCC-ACGg -3' miRNA: 3'- -CGCCGGGCCUACuu-------GGGgGAGGaUGU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 168751 | 0.68 | 0.764238 |
Target: 5'- aCGGCCUGG-UGGuCCgCCUCCUGuCGg -3' miRNA: 3'- cGCCGGGCCuACUuGGgGGAGGAU-GU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 62795 | 0.68 | 0.770487 |
Target: 5'- -gGGCCCGGcgucuuugacgaccGUGGccGCCUCCgUCCUACc -3' miRNA: 3'- cgCCGGGCC--------------UACU--UGGGGG-AGGAUGu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 85339 | 0.68 | 0.770487 |
Target: 5'- cGCGGCCCGccgcaGGccggcgucucucucACCCCCUCCUu-- -3' miRNA: 3'- -CGCCGGGCcua--CU--------------UGGGGGAGGAugu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 11937 | 0.68 | 0.781948 |
Target: 5'- -gGGCCCGGcUGGugCUCCUgCUGgGa -3' miRNA: 3'- cgCCGGGCCuACUugGGGGAgGAUgU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 167181 | 0.68 | 0.790627 |
Target: 5'- gGCGGCCgCGGcgGAgGCCUUCUgCUugGg -3' miRNA: 3'- -CGCCGG-GCCuaCU-UGGGGGAgGAugU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 32744 | 0.68 | 0.790627 |
Target: 5'- aGCGGgCgCGGAgGAACCUCCUUCUc-- -3' miRNA: 3'- -CGCCgG-GCCUaCUUGGGGGAGGAugu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 4373 | 0.68 | 0.794063 |
Target: 5'- cGCGGCCCGcgucccgcucGcucacucacccgcucGUGGACCUCCUCCUc-- -3' miRNA: 3'- -CGCCGGGC----------C---------------UACUUGGGGGAGGAugu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 221848 | 0.68 | 0.799177 |
Target: 5'- cGCGGCgCGuccucGACCCCCUCCU-CGu -3' miRNA: 3'- -CGCCGgGCcuac-UUGGGGGAGGAuGU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 188454 | 0.67 | 0.807593 |
Target: 5'- gGCGGUCaGGAUGAcgcGCCUCCgagCUACGa -3' miRNA: 3'- -CGCCGGgCCUACU---UGGGGGag-GAUGU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 94032 | 0.67 | 0.807593 |
Target: 5'- -aGGUCCGGAUcaucguCCgUCUCCUGCAu -3' miRNA: 3'- cgCCGGGCCUAcuu---GGgGGAGGAUGU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 106950 | 0.67 | 0.815046 |
Target: 5'- cGCGGCCUGG-UGGACUCUCaucaaucucuuuaUCCUGg- -3' miRNA: 3'- -CGCCGGGCCuACUUGGGGG-------------AGGAUgu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 233488 | 0.67 | 0.815866 |
Target: 5'- cUGGCCUGGAUcugguucccGAGCCUgugCCUUCUGCu -3' miRNA: 3'- cGCCGGGCCUA---------CUUGGG---GGAGGAUGu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 120974 | 0.67 | 0.815866 |
Target: 5'- -aGGCCCGGGUGGAUaUCCgacgcaccgCCUACc -3' miRNA: 3'- cgCCGGGCCUACUUGgGGGa--------GGAUGu -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 226914 | 0.67 | 0.82399 |
Target: 5'- cGCGGCCUccgc-GGCCCCCUCC-GCGc -3' miRNA: 3'- -CGCCGGGccuacUUGGGGGAGGaUGU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 101154 | 0.67 | 0.82399 |
Target: 5'- cGCGGCgCGGucUGcguCCCUCUCCU-CAg -3' miRNA: 3'- -CGCCGgGCCu-ACuu-GGGGGAGGAuGU- -5' |
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14209 | 3' | -59.3 | NC_003521.1 | + | 44540 | 0.67 | 0.82399 |
Target: 5'- aGCGGCCCGGcacgcgcucacAUGAggACgCCCUCa-ACGa -3' miRNA: 3'- -CGCCGGGCC-----------UACU--UGgGGGAGgaUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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