miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 3' -59.3 NC_003521.1 + 233721 0.67 0.846644
Target:  5'- aGCGGCCUGGAgaagGAggacgccGCCgCCgcgUCUGCu -3'
miRNA:   3'- -CGCCGGGCCUa---CU-------UGGgGGa--GGAUGu -5'
14209 3' -59.3 NC_003521.1 + 167114 0.67 0.839763
Target:  5'- cGCGGCCCGGGUc-GCUgCgCUCC-ACGa -3'
miRNA:   3'- -CGCCGGGCCUAcuUGGgG-GAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 76076 0.67 0.839763
Target:  5'- cCGGCgaCCGcGAUGc-CCCCCUCCcGCGc -3'
miRNA:   3'- cGCCG--GGC-CUACuuGGGGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 211822 0.67 0.839763
Target:  5'- uGCGGUCCGGG-GGACCgUCUCgUucGCGu -3'
miRNA:   3'- -CGCCGGGCCUaCUUGGgGGAGgA--UGU- -5'
14209 3' -59.3 NC_003521.1 + 153827 0.67 0.836661
Target:  5'- cGUGGCCCucaucaccGCCgCCUCCUACAu -3'
miRNA:   3'- -CGCCGGGccuacu--UGGgGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 113992 0.67 0.831958
Target:  5'- -gGGCaCCGGcUGcAACCCUCUCCUc-- -3'
miRNA:   3'- cgCCG-GGCCuAC-UUGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 101154 0.67 0.82399
Target:  5'- cGCGGCgCGGucUGcguCCCUCUCCU-CAg -3'
miRNA:   3'- -CGCCGgGCCu-ACuu-GGGGGAGGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 226914 0.67 0.82399
Target:  5'- cGCGGCCUccgc-GGCCCCCUCC-GCGc -3'
miRNA:   3'- -CGCCGGGccuacUUGGGGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 112454 0.67 0.82399
Target:  5'- gGCGGCCCuGGUGGGCgCgCCCggcggggccaCCUACu -3'
miRNA:   3'- -CGCCGGGcCUACUUG-G-GGGa---------GGAUGu -5'
14209 3' -59.3 NC_003521.1 + 44540 0.67 0.82399
Target:  5'- aGCGGCCCGGcacgcgcucacAUGAggACgCCCUCa-ACGa -3'
miRNA:   3'- -CGCCGGGCC-----------UACU--UGgGGGAGgaUGU- -5'
14209 3' -59.3 NC_003521.1 + 122018 0.67 0.82399
Target:  5'- gGCaGCCCuGA--AACCCaCCUCCUACc -3'
miRNA:   3'- -CGcCGGGcCUacUUGGG-GGAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 120974 0.67 0.815866
Target:  5'- -aGGCCCGGGUGGAUaUCCgacgcaccgCCUACc -3'
miRNA:   3'- cgCCGGGCCUACUUGgGGGa--------GGAUGu -5'
14209 3' -59.3 NC_003521.1 + 233488 0.67 0.815866
Target:  5'- cUGGCCUGGAUcugguucccGAGCCUgugCCUUCUGCu -3'
miRNA:   3'- cGCCGGGCCUA---------CUUGGG---GGAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 106950 0.67 0.815046
Target:  5'- cGCGGCCUGG-UGGACUCUCaucaaucucuuuaUCCUGg- -3'
miRNA:   3'- -CGCCGGGCCuACUUGGGGG-------------AGGAUgu -5'
14209 3' -59.3 NC_003521.1 + 188454 0.67 0.807593
Target:  5'- gGCGGUCaGGAUGAcgcGCCUCCgagCUACGa -3'
miRNA:   3'- -CGCCGGgCCUACU---UGGGGGag-GAUGU- -5'
14209 3' -59.3 NC_003521.1 + 94032 0.67 0.807593
Target:  5'- -aGGUCCGGAUcaucguCCgUCUCCUGCAu -3'
miRNA:   3'- cgCCGGGCCUAcuu---GGgGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 221848 0.68 0.799177
Target:  5'- cGCGGCgCGuccucGACCCCCUCCU-CGu -3'
miRNA:   3'- -CGCCGgGCcuac-UUGGGGGAGGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 4373 0.68 0.794063
Target:  5'- cGCGGCCCGcgucccgcucGcucacucacccgcucGUGGACCUCCUCCUc-- -3'
miRNA:   3'- -CGCCGGGC----------C---------------UACUUGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 32744 0.68 0.790627
Target:  5'- aGCGGgCgCGGAgGAACCUCCUUCUc-- -3'
miRNA:   3'- -CGCCgG-GCCUaCUUGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 167181 0.68 0.790627
Target:  5'- gGCGGCCgCGGcgGAgGCCUUCUgCUugGg -3'
miRNA:   3'- -CGCCGG-GCCuaCU-UGGGGGAgGAugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.