miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 5' -58.5 NC_003521.1 + 156586 0.66 0.900198
Target:  5'- --aGCGGGUGGGGGU-CACCaUCCa- -3'
miRNA:   3'- ccaCGUCUACCUCCAcGUGGgAGGga -5'
14209 5' -58.5 NC_003521.1 + 148387 0.66 0.900198
Target:  5'- gGGUGCGGGgaggcugGGGGGUGaggGCuCCaCCCg -3'
miRNA:   3'- -CCACGUCUa------CCUCCACg--UG-GGaGGGa -5'
14209 5' -58.5 NC_003521.1 + 38161 0.66 0.900198
Target:  5'- gGGUGUAGGUGcAGG-GCgucccagcgggGCCgCUCCCa -3'
miRNA:   3'- -CCACGUCUACcUCCaCG-----------UGG-GAGGGa -5'
14209 5' -58.5 NC_003521.1 + 81643 0.66 0.893958
Target:  5'- cGGcGCGGAUGGugcGGUcugaACUCUCCCa -3'
miRNA:   3'- -CCaCGUCUACCu--CCAcg--UGGGAGGGa -5'
14209 5' -58.5 NC_003521.1 + 23580 0.66 0.887508
Target:  5'- uGGUGguGGgcgcGGGGGUGCugGCCUgcaUCCUc -3'
miRNA:   3'- -CCACguCUa---CCUCCACG--UGGG---AGGGa -5'
14209 5' -58.5 NC_003521.1 + 70306 0.66 0.886851
Target:  5'- cGGUGCAGGUcgcccagcagcgaGGcGGUGaCGCCgUCCa- -3'
miRNA:   3'- -CCACGUCUA-------------CCuCCAC-GUGGgAGGga -5'
14209 5' -58.5 NC_003521.1 + 120629 0.66 0.88085
Target:  5'- --gGCAGcgGGcAGG-GCACCCacacgCCCUc -3'
miRNA:   3'- ccaCGUCuaCC-UCCaCGUGGGa----GGGA- -5'
14209 5' -58.5 NC_003521.1 + 82837 0.67 0.86693
Target:  5'- cGGcaCAGGUGGAGGUGC-CCaagCCUg -3'
miRNA:   3'- -CCacGUCUACCUCCACGuGGga-GGGa -5'
14209 5' -58.5 NC_003521.1 + 160513 0.67 0.86693
Target:  5'- --gGCGGGaGGAGGgggcgGCAgCCUCCUc -3'
miRNA:   3'- ccaCGUCUaCCUCCa----CGUgGGAGGGa -5'
14209 5' -58.5 NC_003521.1 + 110000 0.67 0.859677
Target:  5'- cGGUccaGCAGGcgGGAGauGUGCACCCggCUCUc -3'
miRNA:   3'- -CCA---CGUCUa-CCUC--CACGUGGGa-GGGA- -5'
14209 5' -58.5 NC_003521.1 + 74924 0.67 0.844609
Target:  5'- cGGcccgGCAGcgcggGGuGGUGUACCCgccgCCCg -3'
miRNA:   3'- -CCa---CGUCua---CCuCCACGUGGGa---GGGa -5'
14209 5' -58.5 NC_003521.1 + 69141 0.67 0.828833
Target:  5'- gGGUgGCAGcgGGGcGGUGUACaucugCUCCCc -3'
miRNA:   3'- -CCA-CGUCuaCCU-CCACGUGg----GAGGGa -5'
14209 5' -58.5 NC_003521.1 + 193320 0.68 0.812399
Target:  5'- uGG-GCAcGGUGGGGGUGguCGCCUucguUCCCa -3'
miRNA:   3'- -CCaCGU-CUACCUCCAC--GUGGG----AGGGa -5'
14209 5' -58.5 NC_003521.1 + 5176 0.68 0.803953
Target:  5'- aGGgGCGGcga-GGGUGCAcCCCUCCCa -3'
miRNA:   3'- -CCaCGUCuaccUCCACGU-GGGAGGGa -5'
14209 5' -58.5 NC_003521.1 + 18169 0.68 0.803953
Target:  5'- uGG-GCAGcGUGGAGGcgcUGCGCgCCUgCCg -3'
miRNA:   3'- -CCaCGUC-UACCUCC---ACGUG-GGAgGGa -5'
14209 5' -58.5 NC_003521.1 + 150558 0.69 0.721491
Target:  5'- uGGUGCGGGUGGuGGcgGCGgcggcggcgcggcUCCUCCUc -3'
miRNA:   3'- -CCACGUCUACCuCCa-CGU-------------GGGAGGGa -5'
14209 5' -58.5 NC_003521.1 + 155247 0.72 0.593997
Target:  5'- uGGUGguGGUGGGGGgcggcggcggcgGCGCCUcaggCCCg -3'
miRNA:   3'- -CCACguCUACCUCCa-----------CGUGGGa---GGGa -5'
14209 5' -58.5 NC_003521.1 + 155187 0.72 0.586199
Target:  5'- cGGcUGCcgGGggGGAGGUGCACgaCCUCUCg -3'
miRNA:   3'- -CC-ACG--UCuaCCUCCACGUG--GGAGGGa -5'
14209 5' -58.5 NC_003521.1 + 204741 0.73 0.509754
Target:  5'- gGGUGguGAUGGAGGcGCcGCCgCcgCCCUg -3'
miRNA:   3'- -CCACguCUACCUCCaCG-UGG-Ga-GGGA- -5'
14209 5' -58.5 NC_003521.1 + 235633 0.74 0.491263
Target:  5'- uGGUGUuucAGuUGGgagGGGUGCACCCUCgCCg -3'
miRNA:   3'- -CCACG---UCuACC---UCCACGUGGGAG-GGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.