miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 169612 0.67 0.966307
Target:  5'- gCGGuuguaGGGGACGAGGCGGaUGCGa- -3'
miRNA:   3'- aGUCua---CUCCUGCUCCGCUaGCGUcg -5'
14210 3' -54.4 NC_003521.1 + 190971 0.67 0.966307
Target:  5'- -gAGcAUGcuGGACGAGGCcGAgcgGCAGCa -3'
miRNA:   3'- agUC-UACu-CCUGCUCCG-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 133418 0.67 0.965995
Target:  5'- cUCAGGaacuacaUGuuuuGGAUGGGGCGccguUCGCAGg -3'
miRNA:   3'- -AGUCU-------ACu---CCUGCUCCGCu---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 216823 0.67 0.963098
Target:  5'- cCGGAUG-GcGCGcAGGaGGUCGCAGCc -3'
miRNA:   3'- aGUCUACuCcUGC-UCCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 31451 0.67 0.963098
Target:  5'- aCGGG-GAGGACGAcuaugaGGgGuucagcUCGCAGCg -3'
miRNA:   3'- aGUCUaCUCCUGCU------CCgCu-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 71972 0.67 0.963098
Target:  5'- gCAGAUGAGcccGGCGuccGUGAcgCGCAGCu -3'
miRNA:   3'- aGUCUACUC---CUGCuc-CGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 193280 0.67 0.963098
Target:  5'- gCGGGUGccGGGACG-GGCG-UCGgAGUc -3'
miRNA:   3'- aGUCUAC--UCCUGCuCCGCuAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 115928 0.67 0.963098
Target:  5'- -gAGGUGAGGccaguacgguUGGGGCGucUUGCGGCu -3'
miRNA:   3'- agUCUACUCCu---------GCUCCGCu-AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 163735 0.67 0.963098
Target:  5'- -gGGAUGAGcGGCGccGGCGGcaacaGCGGCg -3'
miRNA:   3'- agUCUACUC-CUGCu-CCGCUag---CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 88317 0.68 0.959681
Target:  5'- --cGAUGAGGAUGcGGGUcucgccGAagCGCAGCg -3'
miRNA:   3'- aguCUACUCCUGC-UCCG------CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 230414 0.68 0.959681
Target:  5'- gCGGuuuuUGAGauGCGGGGCGA-CGCGGUa -3'
miRNA:   3'- aGUCu---ACUCc-UGCUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 190524 0.68 0.959681
Target:  5'- -uGGcUGAGGAgCGAGGUGcggCgGCAGCa -3'
miRNA:   3'- agUCuACUCCU-GCUCCGCua-G-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 58020 0.68 0.959681
Target:  5'- -gAGAaGAGGACGAcgagGGCGcgCGCGuguuGCu -3'
miRNA:   3'- agUCUaCUCCUGCU----CCGCuaGCGU----CG- -5'
14210 3' -54.4 NC_003521.1 + 29643 0.68 0.956053
Target:  5'- -----aGAGGACGAGacCGAgCGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCc-GCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 109357 0.68 0.956053
Target:  5'- gCAGGagGccGACGAGGcCGAgagCGCGGCc -3'
miRNA:   3'- aGUCUa-CucCUGCUCC-GCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 123436 0.68 0.956053
Target:  5'- gCGGGauAGGACgGAGGCGc-CGUAGCg -3'
miRNA:   3'- aGUCUacUCCUG-CUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 43663 0.68 0.956053
Target:  5'- gCAGAgagGAGGA-GAGGagGAgcaGCAGCa -3'
miRNA:   3'- aGUCUa--CUCCUgCUCCg-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 228038 0.68 0.952209
Target:  5'- aUCGGAgaucUGAGGGuaauCGGGGCGcacgCGCGGg -3'
miRNA:   3'- -AGUCU----ACUCCU----GCUCCGCua--GCGUCg -5'
14210 3' -54.4 NC_003521.1 + 100590 0.68 0.952209
Target:  5'- gUAGGggccgGuGGACGAGGCGG-CGaAGCg -3'
miRNA:   3'- aGUCUa----CuCCUGCUCCGCUaGCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.