miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 212220 0.67 0.974745
Target:  5'- ---cAUGuacAGGAUGGuGGCGGUgCGCAGCa -3'
miRNA:   3'- agucUAC---UCCUGCU-CCGCUA-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 187898 0.67 0.974745
Target:  5'- aCGGGcggcGGGGGC-AGGuCGAUCaGCAGCu -3'
miRNA:   3'- aGUCUa---CUCCUGcUCC-GCUAG-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 167665 0.67 0.974745
Target:  5'- cCAGGUcGcAGGcCGAGGCGG-CGCcGCc -3'
miRNA:   3'- aGUCUA-C-UCCuGCUCCGCUaGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 99204 0.67 0.974745
Target:  5'- gCGGcgGAGGAUacGGCGGggucCGCGGUc -3'
miRNA:   3'- aGUCuaCUCCUGcuCCGCUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 135753 0.67 0.974745
Target:  5'- cCGGAcGuucccGGGAcCGaAGGCGGUgGCGGCa -3'
miRNA:   3'- aGUCUaC-----UCCU-GC-UCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 86196 0.67 0.974745
Target:  5'- gCGGGccacGGugGAGGCGAaggGCGGCg -3'
miRNA:   3'- aGUCUacu-CCugCUCCGCUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 71272 0.67 0.972125
Target:  5'- aUCGGcgGAGG-CGGGGgc--CGCGGCa -3'
miRNA:   3'- -AGUCuaCUCCuGCUCCgcuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 18715 0.67 0.972125
Target:  5'- cCGGcUGuGGcugccgcugGCGGcGGCGAUCGUGGCg -3'
miRNA:   3'- aGUCuACuCC---------UGCU-CCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 19048 0.67 0.972125
Target:  5'- -uGGAgcuucGAGGACGGcGGCGcggCGCAGa -3'
miRNA:   3'- agUCUa----CUCCUGCU-CCGCua-GCGUCg -5'
14210 3' -54.4 NC_003521.1 + 167703 0.67 0.972125
Target:  5'- cUCGug-GAGGAgGcGGCGGUaGCAGCg -3'
miRNA:   3'- -AGUcuaCUCCUgCuCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 22172 0.67 0.972125
Target:  5'- -uGGAgaGGGACGAGGCGc-CGcCGGCc -3'
miRNA:   3'- agUCUacUCCUGCUCCGCuaGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 195363 0.67 0.971852
Target:  5'- cCGGGUgaaggugacgcccGAGGACGAGGCGcccguaccguaAUCGgaGGCc -3'
miRNA:   3'- aGUCUA-------------CUCCUGCUCCGC-----------UAGCg-UCG- -5'
14210 3' -54.4 NC_003521.1 + 66906 0.67 0.971578
Target:  5'- gCAGAUGAGGGgGAGGaaagccaaGCAGa -3'
miRNA:   3'- aGUCUACUCCUgCUCCgcuag---CGUCg -5'
14210 3' -54.4 NC_003521.1 + 209082 0.67 0.969314
Target:  5'- cCGGucGAGGcgGCgGAGGCGGUggcCGCGGCg -3'
miRNA:   3'- aGUCuaCUCC--UG-CUCCGCUA---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 157029 0.67 0.969314
Target:  5'- gCAGGUuucGGGGGCGcGGUcgGAggagCGCGGCg -3'
miRNA:   3'- aGUCUA---CUCCUGCuCCG--CUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98462 0.67 0.969314
Target:  5'- -----aGAGGAgGAGGUaGUCGUAGUg -3'
miRNA:   3'- agucuaCUCCUgCUCCGcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 236342 0.67 0.969314
Target:  5'- aCGGggGAGGACGAuaaaagaucGGgGGcCGCAGg -3'
miRNA:   3'- aGUCuaCUCCUGCU---------CCgCUaGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 63871 0.67 0.969314
Target:  5'- aCGGu---GGACGAGGCGGcgCGCcgggAGCu -3'
miRNA:   3'- aGUCuacuCCUGCUCCGCUa-GCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 35784 0.67 0.969022
Target:  5'- gCAGAc--GGACGAaacggauccaucgGGCG-UCGCGGCa -3'
miRNA:   3'- aGUCUacuCCUGCU-------------CCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 169612 0.67 0.966307
Target:  5'- gCGGuuguaGGGGACGAGGCGGaUGCGa- -3'
miRNA:   3'- aGUCua---CUCCUGCUCCGCUaGCGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.