miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 36976 0.66 0.983268
Target:  5'- gCGGGUGcucGGcGGCGAcauccgcgacgagGGCG-UCGCGGCg -3'
miRNA:   3'- aGUCUAC---UC-CUGCU-------------CCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 118698 0.66 0.981528
Target:  5'- gCuGGUgGAGGGCaggcucauGGGCGAggggCGCGGCa -3'
miRNA:   3'- aGuCUA-CUCCUGc-------UCCGCUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126825 0.66 0.981528
Target:  5'- gCAGAaGAGGA-GAGG--GUUGCAGCc -3'
miRNA:   3'- aGUCUaCUCCUgCUCCgcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 146716 0.66 0.981528
Target:  5'- -aGGAUGAGGAgGGGGgaggGGUUGUuGCg -3'
miRNA:   3'- agUCUACUCCUgCUCCg---CUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 110183 0.66 0.981528
Target:  5'- aCAGGagguUGGGGugGAGGC---CGCuGGCg -3'
miRNA:   3'- aGUCU----ACUCCugCUCCGcuaGCG-UCG- -5'
14210 3' -54.4 NC_003521.1 + 43235 0.66 0.981528
Target:  5'- gCAGcgG-GGAa-GGGCGAguaGCAGCg -3'
miRNA:   3'- aGUCuaCuCCUgcUCCGCUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 167375 0.66 0.981528
Target:  5'- --cGGUGAGGACGuGGUGccgaaagagcUCGuCGGCg -3'
miRNA:   3'- aguCUACUCCUGCuCCGCu---------AGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 75793 0.66 0.981528
Target:  5'- -aAGA--AGGccGCGAuggaagccgcGGCGAUCGCGGCc -3'
miRNA:   3'- agUCUacUCC--UGCU----------CCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 46379 0.66 0.97944
Target:  5'- gCGGcuGUGAGGggcGCGGGGUGcgUGgGGCg -3'
miRNA:   3'- aGUC--UACUCC---UGCUCCGCuaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 160511 0.66 0.97944
Target:  5'- gCGGcggGAGGAgGGGGCG---GCAGCc -3'
miRNA:   3'- aGUCua-CUCCUgCUCCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 17597 0.66 0.97944
Target:  5'- aCGGcu--GGACGcgccAGGCG-UCGCGGCg -3'
miRNA:   3'- aGUCuacuCCUGC----UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 119520 0.66 0.97944
Target:  5'- gUCAGGUGcGGGuACGGGuuGugcCGCAGCa -3'
miRNA:   3'- -AGUCUAC-UCC-UGCUCcgCua-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 19439 0.66 0.97944
Target:  5'- -aGGGUGAGaaaGGGGgGAggCGCGGCg -3'
miRNA:   3'- agUCUACUCcugCUCCgCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 17468 0.66 0.97944
Target:  5'- cUCGGAgGAGaGACGAcGGCaccGGUaGCGGCg -3'
miRNA:   3'- -AGUCUaCUC-CUGCU-CCG---CUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 191224 0.66 0.977181
Target:  5'- uUCGGGguaaucgagucuUG-GGAgGAGGCGGcgcCGCGGCc -3'
miRNA:   3'- -AGUCU------------ACuCCUgCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 165010 0.66 0.977181
Target:  5'- cCAGc-GAGGAgGccGCGAUCGCcGCg -3'
miRNA:   3'- aGUCuaCUCCUgCucCGCUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 129889 0.66 0.977181
Target:  5'- -gGGAggagGAGGACGAcgacggGGCGGcCGCGcGCc -3'
miRNA:   3'- agUCUa---CUCCUGCU------CCGCUaGCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 126435 0.66 0.977181
Target:  5'- cCAGGcggucGAGGAUGAGGaagaGAaacaGCAGCg -3'
miRNA:   3'- aGUCUa----CUCCUGCUCCg---CUag--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 213608 0.66 0.977181
Target:  5'- cCAGGcuguUGGGGugGcGGuCGccgCGCAGCa -3'
miRNA:   3'- aGUCU----ACUCCugCuCC-GCua-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 99204 0.67 0.974745
Target:  5'- gCGGcgGAGGAUacGGCGGggucCGCGGUc -3'
miRNA:   3'- aGUCuaCUCCUGcuCCGCUa---GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.