miRNA display CGI


Results 21 - 40 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 87378 0.73 0.758243
Target:  5'- -gAGGUgGAGGACGAGGCGG-CGgAGg -3'
miRNA:   3'- agUCUA-CUCCUGCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 167411 0.73 0.758243
Target:  5'- gCAGGUcGGGGAaGuGGCGG-CGCAGCa -3'
miRNA:   3'- aGUCUA-CUCCUgCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 120955 0.73 0.758243
Target:  5'- -aGGGgcaGGGGGCGGGGCGGUuUGCGGUc -3'
miRNA:   3'- agUCUa--CUCCUGCUCCGCUA-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 168506 0.73 0.761969
Target:  5'- aCGGAggcgGAGGACGGcgacgccagcaggcuGGCGGccagCGCGGCg -3'
miRNA:   3'- aGUCUa---CUCCUGCU---------------CCGCUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 13421 0.72 0.784837
Target:  5'- gUCAGAUgggaacggucgccGAGGACGAcGGaCGucaagCGCAGCg -3'
miRNA:   3'- -AGUCUA-------------CUCCUGCU-CC-GCua---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 77701 0.72 0.785735
Target:  5'- aCAGAUgcccGAGGagGCGGcGGUGGUCGUGGCg -3'
miRNA:   3'- aGUCUA----CUCC--UGCU-CCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 119312 0.72 0.785735
Target:  5'- cCAGGUGAGG-CGGauGGUGAUgCGCAcGCg -3'
miRNA:   3'- aGUCUACUCCuGCU--CCGCUA-GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 93982 0.72 0.806885
Target:  5'- gCGGAggcGAGGACGAGGCGccccccagacaggCGgAGCg -3'
miRNA:   3'- aGUCUa--CUCCUGCUCCGCua-----------GCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 98575 0.72 0.811185
Target:  5'- gUCGGccGAGGAgGAGcgggcccGCGAgCGCAGCg -3'
miRNA:   3'- -AGUCuaCUCCUgCUC-------CGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 52869 0.72 0.812041
Target:  5'- cCAGGUGGGGugGuGGgGAcuuUCGUGGUu -3'
miRNA:   3'- aGUCUACUCCugCuCCgCU---AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 37329 0.72 0.82881
Target:  5'- ------uGGGugGGGGCGGUCGCGGa -3'
miRNA:   3'- agucuacUCCugCUCCGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 85861 0.72 0.82881
Target:  5'- gCAGAUGAugcaGGGCaccAGGCGcUCGCGGUa -3'
miRNA:   3'- aGUCUACU----CCUGc--UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 58866 0.71 0.836942
Target:  5'- gCAGGUaaaggcccacgaGAGGugGcgcGGCGAgUCGCAGCc -3'
miRNA:   3'- aGUCUA------------CUCCugCu--CCGCU-AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 101794 0.71 0.844109
Target:  5'- gUCAGuUGGGcGCGcacgaagcccaggGGGCGGUCGCGGUa -3'
miRNA:   3'- -AGUCuACUCcUGC-------------UCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 179728 0.71 0.844896
Target:  5'- cUCAGcugcgaGAGGAUGAcGGCGAUCucCAGCg -3'
miRNA:   3'- -AGUCua----CUCCUGCU-CCGCUAGc-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 185340 0.71 0.844896
Target:  5'- -uGGAgcaccagGAGGACGgcaAGGCGG-CGCAGUg -3'
miRNA:   3'- agUCUa------CUCCUGC---UCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 150562 0.71 0.844896
Target:  5'- gCGGGUGGuGGCGGcGGCGGcggCGCGGCu -3'
miRNA:   3'- aGUCUACUcCUGCU-CCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 39040 0.71 0.852666
Target:  5'- gCGGGUGuGGcgcCGAGGCGAacggcUCGUAGUu -3'
miRNA:   3'- aGUCUACuCCu--GCUCCGCU-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 239268 0.71 0.852666
Target:  5'- gCGGGUGuGGcgcCGAGGCGAacggcUCGUAGUu -3'
miRNA:   3'- aGUCUACuCCu--GCUCCGCU-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 217166 0.71 0.859495
Target:  5'- gCAGAUGAGaAUGAGgaauaccGCGAUCGUGGUg -3'
miRNA:   3'- aGUCUACUCcUGCUC-------CGCUAGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.