miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 66765 1.11 0.004811
Target:  5'- gUCAGAUGAGGACGAGGCGAUCGCAGCc -3'
miRNA:   3'- -AGUCUACUCCUGCUCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 215631 0.86 0.199657
Target:  5'- gUCGG-UGAGGACGGGGCuccgcauGGUCGCGGCg -3'
miRNA:   3'- -AGUCuACUCCUGCUCCG-------CUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216901 0.81 0.341296
Target:  5'- gCAGGUGAGGA-GGGcGCGGUgGCAGCg -3'
miRNA:   3'- aGUCUACUCCUgCUC-CGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 88057 0.8 0.413323
Target:  5'- gCGGAUGAGGuCGcGGUGGUCgGCGGCg -3'
miRNA:   3'- aGUCUACUCCuGCuCCGCUAG-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 18886 0.79 0.448205
Target:  5'- gCAGcgacGAGGACGAGGCGc-CGCGGCa -3'
miRNA:   3'- aGUCua--CUCCUGCUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91998 0.79 0.466246
Target:  5'- cUCGGccGAGGGC-AGGCGGUCGCcGCg -3'
miRNA:   3'- -AGUCuaCUCCUGcUCCGCUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 178054 0.78 0.484657
Target:  5'- gUCAGGcuggUGGGGACGGGaaggucgaggucGCGGUCGCGGUa -3'
miRNA:   3'- -AGUCU----ACUCCUGCUC------------CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 34409 0.77 0.551553
Target:  5'- cCAGGUGAGGAUcagcuGGGCG-UCGCGGUg -3'
miRNA:   3'- aGUCUACUCCUGc----UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 102930 0.77 0.571216
Target:  5'- aCGGuuUGAGGGcCGAGGCG-UCGCGGUc -3'
miRNA:   3'- aGUCu-ACUCCU-GCUCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 71436 0.76 0.581112
Target:  5'- -----aGAGGACGAGGCGGggaUCGCGGg -3'
miRNA:   3'- agucuaCUCCUGCUCCGCU---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 123221 0.76 0.620982
Target:  5'- -aGGAcGGGGGCGgcgguAGGUGGUCGUAGCg -3'
miRNA:   3'- agUCUaCUCCUGC-----UCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 30992 0.75 0.630987
Target:  5'- gCGGAUcGGGAUGGGGCGA-CGaCGGCg -3'
miRNA:   3'- aGUCUAcUCCUGCUCCGCUaGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 186772 0.75 0.680872
Target:  5'- aUCGGcgGAGG-CGGcGGUGGUgGCGGCg -3'
miRNA:   3'- -AGUCuaCUCCuGCU-CCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 166842 0.74 0.700613
Target:  5'- --cGGUGAGGAuaCGcAGGCGGUggCGCGGCg -3'
miRNA:   3'- aguCUACUCCU--GC-UCCGCUA--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 117939 0.74 0.710406
Target:  5'- aCGGggGAGGAgGAGaGCaucAUCGCGGCg -3'
miRNA:   3'- aGUCuaCUCCUgCUC-CGc--UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 131753 0.74 0.710406
Target:  5'- aCGGccugGAGGACcAGGCGGUgaucCGCAGCg -3'
miRNA:   3'- aGUCua--CUCCUGcUCCGCUA----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178400 0.74 0.729792
Target:  5'- cUCAGAcGAGGAgauUGGGGUGcgUGCAGUa -3'
miRNA:   3'- -AGUCUaCUCCU---GCUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 92001 0.73 0.739368
Target:  5'- aCGGAgcggGAGcGGCGAGGCGcg-GCGGCg -3'
miRNA:   3'- aGUCUa---CUC-CUGCUCCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 196887 0.73 0.739368
Target:  5'- gCGGGUGAGGcCGGGGCgGAagGCGGg -3'
miRNA:   3'- aGUCUACUCCuGCUCCG-CUagCGUCg -5'
14210 3' -54.4 NC_003521.1 + 87378 0.73 0.758243
Target:  5'- -gAGGUgGAGGACGAGGCGG-CGgAGg -3'
miRNA:   3'- agUCUA-CUCCUGCUCCGCUaGCgUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.