miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 134505 0.71 0.867625
Target:  5'- gCGGAUGAGG-C-AGGCGAUgCGCacGGCc -3'
miRNA:   3'- aGUCUACUCCuGcUCCGCUA-GCG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 87378 0.73 0.758243
Target:  5'- -gAGGUgGAGGACGAGGCGG-CGgAGg -3'
miRNA:   3'- agUCUA-CUCCUGCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 168506 0.73 0.761969
Target:  5'- aCGGAggcgGAGGACGGcgacgccagcaggcuGGCGGccagCGCGGCg -3'
miRNA:   3'- aGUCUa---CUCCUGCU---------------CCGCUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 119312 0.72 0.785735
Target:  5'- cCAGGUGAGG-CGGauGGUGAUgCGCAcGCg -3'
miRNA:   3'- aGUCUACUCCuGCU--CCGCUA-GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 52869 0.72 0.812041
Target:  5'- cCAGGUGGGGugGuGGgGAcuuUCGUGGUu -3'
miRNA:   3'- aGUCUACUCCugCuCCgCU---AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 58866 0.71 0.836942
Target:  5'- gCAGGUaaaggcccacgaGAGGugGcgcGGCGAgUCGCAGCc -3'
miRNA:   3'- aGUCUA------------CUCCugCu--CCGCU-AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 101794 0.71 0.844109
Target:  5'- gUCAGuUGGGcGCGcacgaagcccaggGGGCGGUCGCGGUa -3'
miRNA:   3'- -AGUCuACUCcUGC-------------UCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 150562 0.71 0.844896
Target:  5'- gCGGGUGGuGGCGGcGGCGGcggCGCGGCu -3'
miRNA:   3'- aGUCUACUcCUGCU-CCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 239268 0.71 0.852666
Target:  5'- gCGGGUGuGGcgcCGAGGCGAacggcUCGUAGUu -3'
miRNA:   3'- aGUCUACuCCu--GCUCCGCU-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 120955 0.73 0.758243
Target:  5'- -aGGGgcaGGGGGCGGGGCGGUuUGCGGUc -3'
miRNA:   3'- agUCUa--CUCCUGCUCCGCUA-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 92001 0.73 0.739368
Target:  5'- aCGGAgcggGAGcGGCGAGGCGcg-GCGGCg -3'
miRNA:   3'- aGUCUa---CUC-CUGCUCCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 196887 0.73 0.739368
Target:  5'- gCGGGUGAGGcCGGGGCgGAagGCGGg -3'
miRNA:   3'- aGUCUACUCCuGCUCCG-CUagCGUCg -5'
14210 3' -54.4 NC_003521.1 + 88057 0.8 0.413323
Target:  5'- gCGGAUGAGGuCGcGGUGGUCgGCGGCg -3'
miRNA:   3'- aGUCUACUCCuGCuCCGCUAG-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 34409 0.77 0.551553
Target:  5'- cCAGGUGAGGAUcagcuGGGCG-UCGCGGUg -3'
miRNA:   3'- aGUCUACUCCUGc----UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 71436 0.76 0.581112
Target:  5'- -----aGAGGACGAGGCGGggaUCGCGGg -3'
miRNA:   3'- agucuaCUCCUGCUCCGCU---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 30992 0.75 0.630987
Target:  5'- gCGGAUcGGGAUGGGGCGA-CGaCGGCg -3'
miRNA:   3'- aGUCUAcUCCUGCUCCGCUaGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 166842 0.74 0.700613
Target:  5'- --cGGUGAGGAuaCGcAGGCGGUggCGCGGCg -3'
miRNA:   3'- aguCUACUCCU--GC-UCCGCUA--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 117939 0.74 0.710406
Target:  5'- aCGGggGAGGAgGAGaGCaucAUCGCGGCg -3'
miRNA:   3'- aGUCuaCUCCUgCUC-CGc--UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 131753 0.74 0.710406
Target:  5'- aCGGccugGAGGACcAGGCGGUgaucCGCAGCg -3'
miRNA:   3'- aGUCua--CUCCUGcUCCGCUA----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178400 0.74 0.729792
Target:  5'- cUCAGAcGAGGAgauUGGGGUGcgUGCAGUa -3'
miRNA:   3'- -AGUCUaCUCCU---GCUCCGCuaGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.