miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 66765 1.11 0.004811
Target:  5'- gUCAGAUGAGGACGAGGCGAUCGCAGCc -3'
miRNA:   3'- -AGUCUACUCCUGCUCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 179728 0.71 0.844896
Target:  5'- cUCAGcugcgaGAGGAUGAcGGCGAUCucCAGCg -3'
miRNA:   3'- -AGUCua----CUCCUGCU-CCGCUAGc-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 217166 0.71 0.859495
Target:  5'- gCAGAUGAGaAUGAGgaauaccGCGAUCGUGGUg -3'
miRNA:   3'- aGUCUACUCcUGCUC-------CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126626 0.66 0.985223
Target:  5'- aCGGcgauGGACGgucGGGUGAcgCGCAGCa -3'
miRNA:   3'- aGUCuacuCCUGC---UCCGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178054 0.78 0.484657
Target:  5'- gUCAGGcuggUGGGGACGGGaaggucgaggucGCGGUCGCGGUa -3'
miRNA:   3'- -AGUCU----ACUCCUGCUC------------CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 102930 0.77 0.571216
Target:  5'- aCGGuuUGAGGGcCGAGGCG-UCGCGGUc -3'
miRNA:   3'- aGUCu-ACUCCU-GCUCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 186772 0.75 0.680872
Target:  5'- aUCGGcgGAGG-CGGcGGUGGUgGCGGCg -3'
miRNA:   3'- -AGUCuaCUCCuGCU-CCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 167411 0.73 0.758243
Target:  5'- gCAGGUcGGGGAaGuGGCGG-CGCAGCa -3'
miRNA:   3'- aGUCUA-CUCCUgCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 77701 0.72 0.785735
Target:  5'- aCAGAUgcccGAGGagGCGGcGGUGGUCGUGGCg -3'
miRNA:   3'- aGUCUA----CUCC--UGCU-CCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 185340 0.71 0.844896
Target:  5'- -uGGAgcaccagGAGGACGgcaAGGCGG-CGCAGUg -3'
miRNA:   3'- agUCUa------CUCCUGC---UCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98575 0.72 0.811185
Target:  5'- gUCGGccGAGGAgGAGcgggcccGCGAgCGCAGCg -3'
miRNA:   3'- -AGUCuaCUCCUgCUC-------CGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 13421 0.72 0.784837
Target:  5'- gUCAGAUgggaacggucgccGAGGACGAcGGaCGucaagCGCAGCg -3'
miRNA:   3'- -AGUCUA-------------CUCCUGCU-CC-GCua---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216901 0.81 0.341296
Target:  5'- gCAGGUGAGGA-GGGcGCGGUgGCAGCg -3'
miRNA:   3'- aGUCUACUCCUgCUC-CGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 85861 0.72 0.82881
Target:  5'- gCAGAUGAugcaGGGCaccAGGCGcUCGCGGUa -3'
miRNA:   3'- aGUCUACU----CCUGc--UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 18886 0.79 0.448205
Target:  5'- gCAGcgacGAGGACGAGGCGc-CGCGGCa -3'
miRNA:   3'- aGUCua--CUCCUGCUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 204483 0.73 0.758243
Target:  5'- gUCAGGUGAuaGGACGAgcgguggaucuuGGCGuagcgcaCGCAGCg -3'
miRNA:   3'- -AGUCUACU--CCUGCU------------CCGCua-----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 37329 0.72 0.82881
Target:  5'- ------uGGGugGGGGCGGUCGCGGa -3'
miRNA:   3'- agucuacUCCugCUCCGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 39040 0.71 0.852666
Target:  5'- gCGGGUGuGGcgcCGAGGCGAacggcUCGUAGUu -3'
miRNA:   3'- aGUCUACuCCu--GCUCCGCU-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91998 0.79 0.466246
Target:  5'- cUCGGccGAGGGC-AGGCGGUCGCcGCg -3'
miRNA:   3'- -AGUCuaCUCCUGcUCCGCUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 123221 0.76 0.620982
Target:  5'- -aGGAcGGGGGCGgcgguAGGUGGUCGUAGCg -3'
miRNA:   3'- agUCUaCUCCUGC-----UCCGCUAGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.