miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 5405 0.7 0.888536
Target:  5'- cUCGGGggccucgcccGAGGACGAGGCGGagGaauCGGCg -3'
miRNA:   3'- -AGUCUa---------CUCCUGCUCCGCUagC---GUCG- -5'
14210 3' -54.4 NC_003521.1 + 6466 0.68 0.94386
Target:  5'- gCGGAUGAcGGcACggGAGGCaGGUCcgGCAGCg -3'
miRNA:   3'- aGUCUACU-CC-UG--CUCCG-CUAG--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 6828 0.66 0.983454
Target:  5'- cCAGAccagGAGGGCgccGAGGaGGUUGUAGUg -3'
miRNA:   3'- aGUCUa---CUCCUG---CUCCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 7725 0.7 0.874804
Target:  5'- uUUGGGUGGGGAgGGcGGCGcgaGCGGCg -3'
miRNA:   3'- -AGUCUACUCCUgCU-CCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 11167 0.69 0.913382
Target:  5'- gCAGccGAGGAUGAucccGGUGAg-GCAGCa -3'
miRNA:   3'- aGUCuaCUCCUGCU----CCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 13421 0.72 0.784837
Target:  5'- gUCAGAUgggaacggucgccGAGGACGAcGGaCGucaagCGCAGCg -3'
miRNA:   3'- -AGUCUA-------------CUCCUGCU-CC-GCua---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 17158 0.66 0.983454
Target:  5'- gCGGcgcGAGGcCGAGGCGcagCGCuGGCa -3'
miRNA:   3'- aGUCua-CUCCuGCUCCGCua-GCG-UCG- -5'
14210 3' -54.4 NC_003521.1 + 17233 0.7 0.907505
Target:  5'- cUCGGAggccGAGGugGAGGCG--CGCcGUa -3'
miRNA:   3'- -AGUCUa---CUCCugCUCCGCuaGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 17468 0.66 0.97944
Target:  5'- cUCGGAgGAGaGACGAcGGCaccGGUaGCGGCg -3'
miRNA:   3'- -AGUCUaCUC-CUGCU-CCG---CUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 17597 0.66 0.97944
Target:  5'- aCGGcu--GGACGcgccAGGCG-UCGCGGCg -3'
miRNA:   3'- aGUCuacuCCUGC----UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 18715 0.67 0.972125
Target:  5'- cCGGcUGuGGcugccgcugGCGGcGGCGAUCGUGGCg -3'
miRNA:   3'- aGUCuACuCC---------UGCU-CCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 18886 0.79 0.448205
Target:  5'- gCAGcgacGAGGACGAGGCGc-CGCGGCa -3'
miRNA:   3'- aGUCua--CUCCUGCUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 19048 0.67 0.972125
Target:  5'- -uGGAgcuucGAGGACGGcGGCGcggCGCAGa -3'
miRNA:   3'- agUCUa----CUCCUGCU-CCGCua-GCGUCg -5'
14210 3' -54.4 NC_003521.1 + 19439 0.66 0.97944
Target:  5'- -aGGGUGAGaaaGGGGgGAggCGCGGCg -3'
miRNA:   3'- agUCUACUCcugCUCCgCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 22172 0.67 0.972125
Target:  5'- -uGGAgaGGGACGAGGCGc-CGcCGGCc -3'
miRNA:   3'- agUCUacUCCUGCUCCGCuaGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 28077 0.69 0.919032
Target:  5'- -gGGggGAGGACGAcGGCGGggaaGCcgAGCa -3'
miRNA:   3'- agUCuaCUCCUGCU-CCGCUag--CG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 28956 0.66 0.985223
Target:  5'- cCGGGggGAGGAUGucuguccGCGAUCGUGGUc -3'
miRNA:   3'- aGUCUa-CUCCUGCuc-----CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 29643 0.68 0.956053
Target:  5'- -----aGAGGACGAGacCGAgCGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCc-GCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 30992 0.75 0.630987
Target:  5'- gCGGAUcGGGAUGGGGCGA-CGaCGGCg -3'
miRNA:   3'- aGUCUAcUCCUGCUCCGCUaGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 31451 0.67 0.963098
Target:  5'- aCGGG-GAGGACGAcuaugaGGgGuucagcUCGCAGCg -3'
miRNA:   3'- aGUCUaCUCCUGCU------CCgCu-----AGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.