miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 240450 0.69 0.924454
Target:  5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3'
miRNA:   3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 239268 0.71 0.852666
Target:  5'- gCGGGUGuGGcgcCGAGGCGAacggcUCGUAGUu -3'
miRNA:   3'- aGUCUACuCCu--GCUCCGCU-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 239082 0.7 0.888536
Target:  5'- -uGGcUGAGGACGAGGC-AUCGUucccGGUa -3'
miRNA:   3'- agUCuACUCCUGCUCCGcUAGCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 238466 0.69 0.929648
Target:  5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3'
miRNA:   3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 236342 0.67 0.969314
Target:  5'- aCGGggGAGGACGAuaaaagaucGGgGGcCGCAGg -3'
miRNA:   3'- aGUCuaCUCCUGCU---------CCgCUaGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 236131 0.66 0.985223
Target:  5'- uUCGGGacGGGACGGGGgGGaccgcgcgacgUCGcCGGCg -3'
miRNA:   3'- -AGUCUacUCCUGCUCCgCU-----------AGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 230414 0.68 0.959681
Target:  5'- gCGGuuuuUGAGauGCGGGGCGA-CGCGGUa -3'
miRNA:   3'- aGUCu---ACUCc-UGCUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 228038 0.68 0.952209
Target:  5'- aUCGGAgaucUGAGGGuaauCGGGGCGcacgCGCGGg -3'
miRNA:   3'- -AGUCU----ACUCCU----GCUCCGCua--GCGUCg -5'
14210 3' -54.4 NC_003521.1 + 224015 0.7 0.907505
Target:  5'- gCAGcgGcGGGCccGGCGGUCGgGGCg -3'
miRNA:   3'- aGUCuaCuCCUGcuCCGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 223935 0.7 0.907505
Target:  5'- gCGGccGAGGGgguCGAGGCGGcCGCGGg -3'
miRNA:   3'- aGUCuaCUCCU---GCUCCGCUaGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 222047 0.69 0.929648
Target:  5'- aUCGGcgGGGGGCaccaGCcGUCGCAGCa -3'
miRNA:   3'- -AGUCuaCUCCUGcuc-CGcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 218683 0.69 0.929648
Target:  5'- cCGGuaaGAGGGCGGcGGCGAagGCGGa -3'
miRNA:   3'- aGUCua-CUCCUGCU-CCGCUagCGUCg -5'
14210 3' -54.4 NC_003521.1 + 217166 0.71 0.859495
Target:  5'- gCAGAUGAGaAUGAGgaauaccGCGAUCGUGGUg -3'
miRNA:   3'- aGUCUACUCcUGCUC-------CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216901 0.81 0.341296
Target:  5'- gCAGGUGAGGA-GGGcGCGGUgGCAGCg -3'
miRNA:   3'- aGUCUACUCCUgCUC-CGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216823 0.67 0.963098
Target:  5'- cCGGAUG-GcGCGcAGGaGGUCGCAGCc -3'
miRNA:   3'- aGUCUACuCcUGC-UCCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216739 0.7 0.907505
Target:  5'- gCGGAgaGGGGAUGAGGCGA-CG-GGCu -3'
miRNA:   3'- aGUCUa-CUCCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 215631 0.86 0.199657
Target:  5'- gUCGG-UGAGGACGGGGCuccgcauGGUCGCGGCg -3'
miRNA:   3'- -AGUCuACUCCUGCUCCG-------CUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 213608 0.66 0.977181
Target:  5'- cCAGGcuguUGGGGugGcGGuCGccgCGCAGCa -3'
miRNA:   3'- aGUCU----ACUCCugCuCC-GCua-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 213523 0.66 0.983454
Target:  5'- gUCGG-UGAGGAUGgcGGGCaGcUCGgAGCa -3'
miRNA:   3'- -AGUCuACUCCUGC--UCCG-CuAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 212220 0.67 0.974745
Target:  5'- ---cAUGuacAGGAUGGuGGCGGUgCGCAGCa -3'
miRNA:   3'- agucUAC---UCCUGCU-CCGCUA-GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.