miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 35968 0.65 0.986689
Target:  5'- -aGGAUGGGcGACGAGGaCGA-CGaaccgggcuugguCAGCg -3'
miRNA:   3'- agUCUACUC-CUGCUCC-GCUaGC-------------GUCG- -5'
14210 3' -54.4 NC_003521.1 + 165010 0.66 0.977181
Target:  5'- cCAGc-GAGGAgGccGCGAUCGCcGCg -3'
miRNA:   3'- aGUCuaCUCCUgCucCGCUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 131067 0.66 0.985223
Target:  5'- -uGGAcGcGGugGcGGCGAcCGCGGCu -3'
miRNA:   3'- agUCUaCuCCugCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 51645 0.66 0.983454
Target:  5'- aUAGGaaGGGACGGGGUGGgggUUGCuGCg -3'
miRNA:   3'- aGUCUacUCCUGCUCCGCU---AGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 193313 0.66 0.985053
Target:  5'- -gGGGUGGugggcacGGugGGGGUGGUCGCc-- -3'
miRNA:   3'- agUCUACU-------CCugCUCCGCUAGCGucg -5'
14210 3' -54.4 NC_003521.1 + 126435 0.66 0.977181
Target:  5'- cCAGGcggucGAGGAUGAGGaagaGAaacaGCAGCg -3'
miRNA:   3'- aGUCUa----CUCCUGCUCCg---CUag--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 118698 0.66 0.981528
Target:  5'- gCuGGUgGAGGGCaggcucauGGGCGAggggCGCGGCa -3'
miRNA:   3'- aGuCUA-CUCCUGc-------UCCGCUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 119520 0.66 0.97944
Target:  5'- gUCAGGUGcGGGuACGGGuuGugcCGCAGCa -3'
miRNA:   3'- -AGUCUAC-UCC-UGCUCcgCua-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126626 0.66 0.985223
Target:  5'- aCGGcgauGGACGgucGGGUGAcgCGCAGCa -3'
miRNA:   3'- aGUCuacuCCUGC---UCCGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 17468 0.66 0.97944
Target:  5'- cUCGGAgGAGaGACGAcGGCaccGGUaGCGGCg -3'
miRNA:   3'- -AGUCUaCUC-CUGCU-CCG---CUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 213608 0.66 0.977181
Target:  5'- cCAGGcuguUGGGGugGcGGuCGccgCGCAGCa -3'
miRNA:   3'- aGUCU----ACUCCugCuCC-GCua-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 129889 0.66 0.977181
Target:  5'- -gGGAggagGAGGACGAcgacggGGCGGcCGCGcGCc -3'
miRNA:   3'- agUCUa---CUCCUGCU------CCGCUaGCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 49642 0.66 0.985223
Target:  5'- cCAGcgGGGGGCaGuGGCGcUC-CAGCc -3'
miRNA:   3'- aGUCuaCUCCUG-CuCCGCuAGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 17597 0.66 0.97944
Target:  5'- aCGGcu--GGACGcgccAGGCG-UCGCGGCg -3'
miRNA:   3'- aGUCuacuCCUGC----UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 146875 0.66 0.983268
Target:  5'- cCAGAgGAGGAagccagaCGAcGGCGG--GCAGCg -3'
miRNA:   3'- aGUCUaCUCCU-------GCU-CCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 191224 0.66 0.977181
Target:  5'- uUCGGGguaaucgagucuUG-GGAgGAGGCGGcgcCGCGGCc -3'
miRNA:   3'- -AGUCU------------ACuCCUgCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 160511 0.66 0.97944
Target:  5'- gCGGcggGAGGAgGGGGCG---GCAGCc -3'
miRNA:   3'- aGUCua-CUCCUgCUCCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 99344 0.66 0.985223
Target:  5'- --uGAUGAGGAgGaAGGCGGUgagGCuGCu -3'
miRNA:   3'- aguCUACUCCUgC-UCCGCUAg--CGuCG- -5'
14210 3' -54.4 NC_003521.1 + 121302 0.66 0.985223
Target:  5'- gCAGAUGAGGcCGAaGUGuUCGUGGg -3'
miRNA:   3'- aGUCUACUCCuGCUcCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 213523 0.66 0.983454
Target:  5'- gUCGG-UGAGGAUGgcGGGCaGcUCGgAGCa -3'
miRNA:   3'- -AGUCuACUCCUGC--UCCG-CuAGCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.