miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 34409 0.77 0.551553
Target:  5'- cCAGGUGAGGAUcagcuGGGCG-UCGCGGUg -3'
miRNA:   3'- aGUCUACUCCUGc----UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 35784 0.67 0.969022
Target:  5'- gCAGAc--GGACGAaacggauccaucgGGCG-UCGCGGCa -3'
miRNA:   3'- aGUCUacuCCUGCU-------------CCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 35968 0.65 0.986689
Target:  5'- -aGGAUGGGcGACGAGGaCGA-CGaaccgggcuugguCAGCg -3'
miRNA:   3'- agUCUACUC-CUGCUCC-GCUaGC-------------GUCG- -5'
14210 3' -54.4 NC_003521.1 + 36976 0.66 0.983268
Target:  5'- gCGGGUGcucGGcGGCGAcauccgcgacgagGGCG-UCGCGGCg -3'
miRNA:   3'- aGUCUAC---UC-CUGCU-------------CCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 37329 0.72 0.82881
Target:  5'- ------uGGGugGGGGCGGUCGCGGa -3'
miRNA:   3'- agucuacUCCugCUCCGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 37432 0.69 0.934612
Target:  5'- -aGGcGUGgccGGGACcuGAGGCGAcCGCGGCg -3'
miRNA:   3'- agUC-UAC---UCCUG--CUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 37523 0.69 0.929648
Target:  5'- aUCAGcgacguccugGGGGugGGcagcGGgGGUCGCGGCg -3'
miRNA:   3'- -AGUCua--------CUCCugCU----CCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 38238 0.69 0.929648
Target:  5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3'
miRNA:   3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 38855 0.7 0.888536
Target:  5'- -uGGcUGAGGACGAGGC-AUCGUucccGGUa -3'
miRNA:   3'- agUCuACUCCUGCUCCGcUAGCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 39040 0.71 0.852666
Target:  5'- gCGGGUGuGGcgcCGAGGCGAacggcUCGUAGUu -3'
miRNA:   3'- aGUCUACuCCu--GCUCCGCU-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 40222 0.69 0.924454
Target:  5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3'
miRNA:   3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 40893 0.7 0.874804
Target:  5'- cCGGGgcgGGGGucaguuuaauaGCGAGGCGGggGCGGCc -3'
miRNA:   3'- aGUCUa--CUCC-----------UGCUCCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 43235 0.66 0.981528
Target:  5'- gCAGcgG-GGAa-GGGCGAguaGCAGCg -3'
miRNA:   3'- aGUCuaCuCCUgcUCCGCUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 43627 0.7 0.901403
Target:  5'- -----cGAGGACGAGGaGGagGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCCgCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 43663 0.68 0.956053
Target:  5'- gCAGAgagGAGGA-GAGGagGAgcaGCAGCa -3'
miRNA:   3'- aGUCUa--CUCCUgCUCCg-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 46071 0.7 0.895079
Target:  5'- -gGGAUGAGGucGCGAcgcccGGCG-UCGCAGa -3'
miRNA:   3'- agUCUACUCC--UGCU-----CCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 46379 0.66 0.97944
Target:  5'- gCGGcuGUGAGGggcGCGGGGUGcgUGgGGCg -3'
miRNA:   3'- aGUC--UACUCC---UGCUCCGCuaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 48719 0.69 0.919032
Target:  5'- cCGGGaGAGGugGAgacgccGGCGAcgcUGCAGCa -3'
miRNA:   3'- aGUCUaCUCCugCU------CCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 49642 0.66 0.985223
Target:  5'- cCAGcgGGGGGCaGuGGCGcUC-CAGCc -3'
miRNA:   3'- aGUCuaCUCCUG-CuCCGCuAGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 49667 0.7 0.874804
Target:  5'- -uGGAgaGGGGCcGGGCGAgCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGcUCCGCUaGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.