miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 51645 0.66 0.983454
Target:  5'- aUAGGaaGGGACGGGGUGGgggUUGCuGCg -3'
miRNA:   3'- aGUCUacUCCUGCUCCGCU---AGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 52869 0.72 0.812041
Target:  5'- cCAGGUGGGGugGuGGgGAcuuUCGUGGUu -3'
miRNA:   3'- aGUCUACUCCugCuCCgCU---AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 56029 0.68 0.950611
Target:  5'- -gAGGUGAGGAUggGAGGgGAaugcugcccgaagUGCAGCg -3'
miRNA:   3'- agUCUACUCCUG--CUCCgCUa------------GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 58020 0.68 0.959681
Target:  5'- -gAGAaGAGGACGAcgagGGCGcgCGCGuguuGCu -3'
miRNA:   3'- agUCUaCUCCUGCU----CCGCuaGCGU----CG- -5'
14210 3' -54.4 NC_003521.1 + 58866 0.71 0.836942
Target:  5'- gCAGGUaaaggcccacgaGAGGugGcgcGGCGAgUCGCAGCc -3'
miRNA:   3'- aGUCUA------------CUCCugCu--CCGCU-AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 62312 0.69 0.934613
Target:  5'- cCGGAUGGGcGACGAGGUac-CGCGacGCa -3'
miRNA:   3'- aGUCUACUC-CUGCUCCGcuaGCGU--CG- -5'
14210 3' -54.4 NC_003521.1 + 63871 0.67 0.969314
Target:  5'- aCGGu---GGACGAGGCGGcgCGCcgggAGCu -3'
miRNA:   3'- aGUCuacuCCUGCUCCGCUa-GCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 66765 1.11 0.004811
Target:  5'- gUCAGAUGAGGACGAGGCGAUCGCAGCc -3'
miRNA:   3'- -AGUCUACUCCUGCUCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 66906 0.67 0.971578
Target:  5'- gCAGAUGAGGGgGAGGaaagccaaGCAGa -3'
miRNA:   3'- aGUCUACUCCUgCUCCgcuag---CGUCg -5'
14210 3' -54.4 NC_003521.1 + 69685 0.68 0.952209
Target:  5'- uUCGGGUGAcGGugGuccuGGUgucGGUgGCGGCg -3'
miRNA:   3'- -AGUCUACU-CCugCu---CCG---CUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 71272 0.67 0.972125
Target:  5'- aUCGGcgGAGG-CGGGGgc--CGCGGCa -3'
miRNA:   3'- -AGUCuaCUCCuGCUCCgcuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 71436 0.76 0.581112
Target:  5'- -----aGAGGACGAGGCGGggaUCGCGGg -3'
miRNA:   3'- agucuaCUCCUGCUCCGCU---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 71972 0.67 0.963098
Target:  5'- gCAGAUGAGcccGGCGuccGUGAcgCGCAGCu -3'
miRNA:   3'- aGUCUACUC---CUGCuc-CGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 73522 0.7 0.895079
Target:  5'- aUguGGUGGGcGACGAGGauccGUCGCAGa -3'
miRNA:   3'- -AguCUACUC-CUGCUCCgc--UAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 74569 0.68 0.94386
Target:  5'- ----cUGAGGGCGGcgacggagcGGCGG-CGCGGCg -3'
miRNA:   3'- agucuACUCCUGCU---------CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 75156 0.66 0.985223
Target:  5'- -gGGAUGccuGGACGcauGGUGccagCGCGGCg -3'
miRNA:   3'- agUCUACu--CCUGCu--CCGCua--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 75793 0.66 0.981528
Target:  5'- -aAGA--AGGccGCGAuggaagccgcGGCGAUCGCGGCc -3'
miRNA:   3'- agUCUacUCC--UGCU----------CCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 76191 0.69 0.924454
Target:  5'- aCGGGUcGGGA---GGCGGUCGCGGUg -3'
miRNA:   3'- aGUCUAcUCCUgcuCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 76314 0.69 0.913382
Target:  5'- gCAGcgGAGGugGcGGCGAcaGCuGCg -3'
miRNA:   3'- aGUCuaCUCCugCuCCGCUagCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 77701 0.72 0.785735
Target:  5'- aCAGAUgcccGAGGagGCGGcGGUGGUCGUGGCg -3'
miRNA:   3'- aGUCUA----CUCC--UGCU-CCGCUAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.