miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 3' -55.1 NC_003521.1 + 99463 0.66 0.970342
Target:  5'- -cGCGUCAccGAcCGC-CGCCGcACCCg -3'
miRNA:   3'- auCGCAGUa-CUaGCGaGCGGU-UGGGg -5'
14211 3' -55.1 NC_003521.1 + 28976 0.66 0.968599
Target:  5'- -cGCGaUCGUGGUCGCU-GCCGuacgcgaacgagacgGuCCCCc -3'
miRNA:   3'- auCGC-AGUACUAGCGAgCGGU---------------U-GGGG- -5'
14211 3' -55.1 NC_003521.1 + 186860 0.66 0.967397
Target:  5'- cGGCGgCGUGcagcacgGCUCGUCGGCCCa -3'
miRNA:   3'- aUCGCaGUACuag----CGAGCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 181851 0.66 0.967397
Target:  5'- cUAGCGgc-UGAuUCGCcaCGCaCGACCCCu -3'
miRNA:   3'- -AUCGCaguACU-AGCGa-GCG-GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 56668 0.66 0.967397
Target:  5'- gUAGUGUUGUcGUCGCUCGcCCAugCa- -3'
miRNA:   3'- -AUCGCAGUAcUAGCGAGC-GGUugGgg -5'
14211 3' -55.1 NC_003521.1 + 186367 0.66 0.967397
Target:  5'- aGGCGUCGauaaccAUCGCccCGUCGGCCCa -3'
miRNA:   3'- aUCGCAGUac----UAGCGa-GCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 198384 0.66 0.967397
Target:  5'- cGGCGUUGUGG-CGggCGgCGACUCCg -3'
miRNA:   3'- aUCGCAGUACUaGCgaGCgGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 142386 0.66 0.967397
Target:  5'- -uGCGUCGUcucacCGUaCGCCcGCCCCg -3'
miRNA:   3'- auCGCAGUAcua--GCGaGCGGuUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 151050 0.66 0.964896
Target:  5'- -cGCGUUgaaagcgccgucccuGUGcgCGCggguuucuggacCGCCGACCCCu -3'
miRNA:   3'- auCGCAG---------------UACuaGCGa-----------GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 102087 0.66 0.964251
Target:  5'- gGGCGUgAUGAUgCGCagGCcCAGCUUCu -3'
miRNA:   3'- aUCGCAgUACUA-GCGagCG-GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 142229 0.66 0.964251
Target:  5'- aUGGCcUCGUcgcugCGCUCGCgGGCCCg -3'
miRNA:   3'- -AUCGcAGUAcua--GCGAGCGgUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 18173 0.66 0.964251
Target:  5'- cAGCGUgGaggcgcUGcgCGCcUGCCGGCCCUu -3'
miRNA:   3'- aUCGCAgU------ACuaGCGaGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 111336 0.66 0.964251
Target:  5'- -cGUGUCc----CGCUCGCCAugUCCu -3'
miRNA:   3'- auCGCAGuacuaGCGAGCGGUugGGG- -5'
14211 3' -55.1 NC_003521.1 + 226614 0.66 0.964251
Target:  5'- cGGCGUCA-GGg-GCUCGCCGcaGCacaCCa -3'
miRNA:   3'- aUCGCAGUaCUagCGAGCGGU--UGg--GG- -5'
14211 3' -55.1 NC_003521.1 + 76121 0.66 0.960898
Target:  5'- -cGCGUCGUcuucuUCGUcagcCGCCGGCCUCg -3'
miRNA:   3'- auCGCAGUAcu---AGCGa---GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 109248 0.66 0.960898
Target:  5'- -cGCGUgAUGAUCagGCUCugGCCcACCaCCg -3'
miRNA:   3'- auCGCAgUACUAG--CGAG--CGGuUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 98992 0.66 0.960898
Target:  5'- aGGCGUCAggggagguaccgcGGUCGUcuuguagacgauggCGCCGGCUCCg -3'
miRNA:   3'- aUCGCAGUa------------CUAGCGa-------------GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 152745 0.67 0.957334
Target:  5'- gUGGCccgugGUCAcGggCGC-CGCCGACCaCCg -3'
miRNA:   3'- -AUCG-----CAGUaCuaGCGaGCGGUUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 112891 0.67 0.957334
Target:  5'- -cGaCGUCAgccgcgaGAUCGC-CGCCugggagGGCCCCg -3'
miRNA:   3'- auC-GCAGUa------CUAGCGaGCGG------UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 1051 0.67 0.956966
Target:  5'- cGGCGUCGgggccaccGAccugcgccagcucUCGC-CGCgCGACCCCu -3'
miRNA:   3'- aUCGCAGUa-------CU-------------AGCGaGCG-GUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.