miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 3' -55.1 NC_003521.1 + 73775 0.76 0.534009
Target:  5'- cGGCGUCAUGAgCGCcaCGCCGcuGCCCg -3'
miRNA:   3'- aUCGCAGUACUaGCGa-GCGGU--UGGGg -5'
14211 3' -55.1 NC_003521.1 + 75004 0.74 0.623213
Target:  5'- -cGCGUaGUGAUCGUggGCCAggACCCCu -3'
miRNA:   3'- auCGCAgUACUAGCGagCGGU--UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 76121 0.66 0.960898
Target:  5'- -cGCGUCGUcuucuUCGUcagcCGCCGGCCUCg -3'
miRNA:   3'- auCGCAGUAcu---AGCGa---GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 77715 0.69 0.903348
Target:  5'- aGGCGgcgGUGGUCGUggCGCUGGCgCCCg -3'
miRNA:   3'- aUCGCag-UACUAGCGa-GCGGUUG-GGG- -5'
14211 3' -55.1 NC_003521.1 + 77987 0.66 0.972825
Target:  5'- -cGcCGUUcugcacgAUGGUCGCgcagaGCCAGCCCUu -3'
miRNA:   3'- auC-GCAG-------UACUAGCGag---CGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 81034 0.66 0.975652
Target:  5'- -cGCugGUCugguUGAUguugaCGCacugCGCCAACCCCa -3'
miRNA:   3'- auCG--CAGu---ACUA-----GCGa---GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 86161 0.69 0.897075
Target:  5'- cAGCGUC----UCGCU-GCCGGCCUCg -3'
miRNA:   3'- aUCGCAGuacuAGCGAgCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 86524 0.66 0.973091
Target:  5'- -cGCGUCGgcccCGgaCGCCGugccGCCCCg -3'
miRNA:   3'- auCGCAGUacuaGCgaGCGGU----UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 98992 0.66 0.960898
Target:  5'- aGGCGUCAggggagguaccgcGGUCGUcuuguagacgauggCGCCGGCUCCg -3'
miRNA:   3'- aUCGCAGUa------------CUAGCGa-------------GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 99463 0.66 0.970342
Target:  5'- -cGCGUCAccGAcCGC-CGCCGcACCCg -3'
miRNA:   3'- auCGCAGUa-CUaGCGaGCGGU-UGGGg -5'
14211 3' -55.1 NC_003521.1 + 102087 0.66 0.964251
Target:  5'- gGGCGUgAUGAUgCGCagGCcCAGCUUCu -3'
miRNA:   3'- aUCGCAgUACUA-GCGagCG-GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 102326 0.7 0.831155
Target:  5'- -cGuCGUCGUGcgCGUgggCGCCGACgCCg -3'
miRNA:   3'- auC-GCAGUACuaGCGa--GCGGUUGgGG- -5'
14211 3' -55.1 NC_003521.1 + 109248 0.66 0.960898
Target:  5'- -cGCGUgAUGAUCagGCUCugGCCcACCaCCg -3'
miRNA:   3'- auCGCAgUACUAG--CGAG--CGGuUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 109593 0.67 0.942691
Target:  5'- cGGCaUCGccGUCGCgacgcugucucuggCGCCGGCCCCu -3'
miRNA:   3'- aUCGcAGUacUAGCGa-------------GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 111336 0.66 0.964251
Target:  5'- -cGUGUCc----CGCUCGCCAugUCCu -3'
miRNA:   3'- auCGCAGuacuaGCGAGCGGUugGGG- -5'
14211 3' -55.1 NC_003521.1 + 111866 0.69 0.876941
Target:  5'- cAGCGcCA----CGC-CGCCAGCCCCu -3'
miRNA:   3'- aUCGCaGUacuaGCGaGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 112846 0.67 0.953554
Target:  5'- gGGCGUCAUGGcCGa--GCU-GCCCCa -3'
miRNA:   3'- aUCGCAGUACUaGCgagCGGuUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 112891 0.67 0.957334
Target:  5'- -cGaCGUCAgccgcgaGAUCGC-CGCCugggagGGCCCCg -3'
miRNA:   3'- auC-GCAGUa------CUAGCGaGCGG------UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 117578 0.67 0.955092
Target:  5'- cGGCGUCuacUGggCGCggCGCUAcgaccaccuaccgccGCCCCc -3'
miRNA:   3'- aUCGCAGu--ACuaGCGa-GCGGU---------------UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 117769 0.69 0.883868
Target:  5'- aGGCGUCGcacacgcugcgGAUCuaUCGCCGuuucuacgGCCCCu -3'
miRNA:   3'- aUCGCAGUa----------CUAGcgAGCGGU--------UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.