miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 3' -55.1 NC_003521.1 + 1051 0.67 0.956966
Target:  5'- cGGCGUCGgggccaccGAccugcgccagcucUCGC-CGCgCGACCCCu -3'
miRNA:   3'- aUCGCAGUa-------CU-------------AGCGaGCG-GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 1645 0.69 0.876237
Target:  5'- gGGCGUCGUGcugcccaGUCGCUgGCUAacgaucuacuGCCgCCa -3'
miRNA:   3'- aUCGCAGUAC-------UAGCGAgCGGU----------UGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 18173 0.66 0.964251
Target:  5'- cAGCGUgGaggcgcUGcgCGCcUGCCGGCCCUu -3'
miRNA:   3'- aUCGCAgU------ACuaGCGaGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 21537 0.74 0.663316
Target:  5'- cUGGCcuUCAUGGgccCGCUCauguGCCAGCCCCu -3'
miRNA:   3'- -AUCGc-AGUACUa--GCGAG----CGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 25154 0.7 0.872684
Target:  5'- cGGCGUUcUGGUCGCgcuuucgcugcuccCGCCGcgaccaugcggaGCCCCg -3'
miRNA:   3'- aUCGCAGuACUAGCGa-------------GCGGU------------UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 25768 0.67 0.953554
Target:  5'- cAGCGUCcuaAUCGCcUGCCuGGCCCUg -3'
miRNA:   3'- aUCGCAGuacUAGCGaGCGG-UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 28976 0.66 0.968599
Target:  5'- -cGCGaUCGUGGUCGCU-GCCGuacgcgaacgagacgGuCCCCc -3'
miRNA:   3'- auCGC-AGUACUAGCGAgCGGU---------------U-GGGG- -5'
14211 3' -55.1 NC_003521.1 + 38336 0.69 0.903348
Target:  5'- aUGGCGUUuuagGAaCGUUCGCCGGCgUCa -3'
miRNA:   3'- -AUCGCAGua--CUaGCGAGCGGUUGgGG- -5'
14211 3' -55.1 NC_003521.1 + 38786 0.72 0.769976
Target:  5'- gAGaCGUCGUGGcUGCauUCGCCgGACCCCc -3'
miRNA:   3'- aUC-GCAGUACUaGCG--AGCGG-UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 39584 0.66 0.970626
Target:  5'- cGGCGUgAUGcgCGCguagaagccguacgGCCGGCCCa -3'
miRNA:   3'- aUCGCAgUACuaGCGag------------CGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 47085 0.66 0.975652
Target:  5'- -cGCGcaggaacuccuUCAUGGUgGC-CGCCAGCUCg -3'
miRNA:   3'- auCGC-----------AGUACUAgCGaGCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 52300 0.68 0.92081
Target:  5'- aUGGCGaCGUGGg-GCcCGCCGGCCUCc -3'
miRNA:   3'- -AUCGCaGUACUagCGaGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 53744 0.67 0.955848
Target:  5'- -cGCGUCccGAgaaccgcgcccucCGCUCGCUGGCaCCCu -3'
miRNA:   3'- auCGCAGuaCUa------------GCGAGCGGUUG-GGG- -5'
14211 3' -55.1 NC_003521.1 + 53865 0.75 0.590184
Target:  5'- uUGGCGUCGUugaaguagcugcucGAgugCGUUCGCCGccGCCCCc -3'
miRNA:   3'- -AUCGCAGUA--------------CUa--GCGAGCGGU--UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 55888 0.69 0.890581
Target:  5'- -cGCuacCAUGcgCGgUCGCCGACCCUc -3'
miRNA:   3'- auCGca-GUACuaGCgAGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 56668 0.66 0.967397
Target:  5'- gUAGUGUUGUcGUCGCUCGcCCAugCa- -3'
miRNA:   3'- -AUCGCAGUAcUAGCGAGC-GGUugGgg -5'
14211 3' -55.1 NC_003521.1 + 66593 1.11 0.004049
Target:  5'- gUAGCGUCAUGAUCGCUCGCCAACCCCa -3'
miRNA:   3'- -AUCGCAGUACUAGCGAGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 68238 0.66 0.973091
Target:  5'- gAGCGguacguUCAccUGGcggUGCgacCGCCGACCCCg -3'
miRNA:   3'- aUCGC------AGU--ACUa--GCGa--GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 71812 0.71 0.788171
Target:  5'- --aCGUCAaGAUCGU--GCCGGCCCCg -3'
miRNA:   3'- aucGCAGUaCUAGCGagCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 71983 0.69 0.897075
Target:  5'- cGGCGUcCGUGAcgcgcaGCUCGCUggGGCCCa -3'
miRNA:   3'- aUCGCA-GUACUag----CGAGCGG--UUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.