miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 3' -55.1 NC_003521.1 + 66593 1.11 0.004049
Target:  5'- gUAGCGUCAUGAUCGCUCGCCAACCCCa -3'
miRNA:   3'- -AUCGCAGUACUAGCGAGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 177810 0.8 0.357574
Target:  5'- gGGCGUCGUGggCGC-CGCCGGCUUCu -3'
miRNA:   3'- aUCGCAGUACuaGCGaGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 73775 0.76 0.534009
Target:  5'- cGGCGUCAUGAgCGCcaCGCCGcuGCCCg -3'
miRNA:   3'- aUCGCAGUACUaGCGa-GCGGU--UGGGg -5'
14211 3' -55.1 NC_003521.1 + 53865 0.75 0.590184
Target:  5'- uUGGCGUCGUugaaguagcugcucGAgugCGUUCGCCGccGCCCCc -3'
miRNA:   3'- -AUCGCAGUA--------------CUa--GCGAGCGGU--UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 75004 0.74 0.623213
Target:  5'- -cGCGUaGUGAUCGUggGCCAggACCCCu -3'
miRNA:   3'- auCGCAgUACUAGCGagCGGU--UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 21537 0.74 0.663316
Target:  5'- cUGGCcuUCAUGGgccCGCUCauguGCCAGCCCCu -3'
miRNA:   3'- -AUCGc-AGUACUa--GCGAG----CGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 167056 0.73 0.683253
Target:  5'- gUGGCGcUCAUGA-CGCcggUGCCGGCCCa -3'
miRNA:   3'- -AUCGC-AGUACUaGCGa--GCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 191147 0.72 0.741819
Target:  5'- cGGCGaCAgcgccgCGCUCGcCCGGCCCCu -3'
miRNA:   3'- aUCGCaGUacua--GCGAGC-GGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 122619 0.72 0.751308
Target:  5'- cGGCGgCGgccGcgCGCUCGgCGGCCCCg -3'
miRNA:   3'- aUCGCaGUa--CuaGCGAGCgGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 239013 0.72 0.769976
Target:  5'- gAGaCGUCGUGGcUGCauUCGCCgGACCCCc -3'
miRNA:   3'- aUC-GCAGUACUaGCG--AGCGG-UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 208095 0.72 0.769976
Target:  5'- -cGCGcCcgcUGGUgGCgUCGCCAACCCCc -3'
miRNA:   3'- auCGCaGu--ACUAgCG-AGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 38786 0.72 0.769976
Target:  5'- gAGaCGUCGUGGcUGCauUCGCCgGACCCCc -3'
miRNA:   3'- aUC-GCAGUACUaGCG--AGCGG-UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 236545 0.72 0.779137
Target:  5'- -cGuCGUUcgGcGUCGCUCGUCGGCUCCg -3'
miRNA:   3'- auC-GCAGuaC-UAGCGAGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 71812 0.71 0.788171
Target:  5'- --aCGUCAaGAUCGU--GCCGGCCCCg -3'
miRNA:   3'- aucGCAGUaCUAGCGagCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 187652 0.71 0.79707
Target:  5'- cGGCGUCGccGAccuccUCGC-CGCCGuCCCCg -3'
miRNA:   3'- aUCGCAGUa-CU-----AGCGaGCGGUuGGGG- -5'
14211 3' -55.1 NC_003521.1 + 102326 0.7 0.831155
Target:  5'- -cGuCGUCGUGcgCGUgggCGCCGACgCCg -3'
miRNA:   3'- auC-GCAGUACuaGCGa--GCGGUUGgGG- -5'
14211 3' -55.1 NC_003521.1 + 212666 0.7 0.831155
Target:  5'- gGGCGUCGcgggcaUGGUCGC-CGCCGuCgCCa -3'
miRNA:   3'- aUCGCAGU------ACUAGCGaGCGGUuGgGG- -5'
14211 3' -55.1 NC_003521.1 + 205810 0.7 0.837653
Target:  5'- -cGCGUCcgccGGgcacgacgcaagCGCUCGCUGGCCCCg -3'
miRNA:   3'- auCGCAGua--CUa-----------GCGAGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 196372 0.7 0.847183
Target:  5'- gUGGCGUUGUacUCGCaUCGCCgAGCCgCCg -3'
miRNA:   3'- -AUCGCAGUAcuAGCG-AGCGG-UUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 193911 0.7 0.847183
Target:  5'- gGGUGUgCA-GAUCGuCUCGCaacGCCCCa -3'
miRNA:   3'- aUCGCA-GUaCUAGC-GAGCGgu-UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.