miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 3' -55.1 NC_003521.1 + 226824 0.68 0.909396
Target:  5'- cAGCGcCAUGGggUC-CUCGCCcGCCgCCg -3'
miRNA:   3'- aUCGCaGUACU--AGcGAGCGGuUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 111866 0.69 0.876941
Target:  5'- cAGCGcCA----CGC-CGCCAGCCCCu -3'
miRNA:   3'- aUCGCaGUacuaGCGaGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 221369 0.69 0.883868
Target:  5'- cAGCGaCAUGGUccCGCcgCGCCucCCCCc -3'
miRNA:   3'- aUCGCaGUACUA--GCGa-GCGGuuGGGG- -5'
14211 3' -55.1 NC_003521.1 + 194690 0.69 0.883868
Target:  5'- cAGCGUCuccaucAUCGCg-GCCGACUCCu -3'
miRNA:   3'- aUCGCAGuac---UAGCGagCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 131321 0.69 0.897075
Target:  5'- cGGCGUCAccUGGcCGUgcagCGCUucGCCCCg -3'
miRNA:   3'- aUCGCAGU--ACUaGCGa---GCGGu-UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 71983 0.69 0.897075
Target:  5'- cGGCGUcCGUGAcgcgcaGCUCGCUggGGCCCa -3'
miRNA:   3'- aUCGCA-GUACUag----CGAGCGG--UUGGGg -5'
14211 3' -55.1 NC_003521.1 + 38336 0.69 0.903348
Target:  5'- aUGGCGUUuuagGAaCGUUCGCCGGCgUCa -3'
miRNA:   3'- -AUCGCAGua--CUaGCGAGCGGUUGgGG- -5'
14211 3' -55.1 NC_003521.1 + 190205 0.69 0.903348
Target:  5'- cGGUGgcaacCGUGAUaaacUGCgUCGUCGACCCCa -3'
miRNA:   3'- aUCGCa----GUACUA----GCG-AGCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 217998 0.69 0.903348
Target:  5'- aUGGCGUaCAUGAUgaCGCUgaUGaaGACCCCg -3'
miRNA:   3'- -AUCGCA-GUACUA--GCGA--GCggUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 201872 0.69 0.876237
Target:  5'- gGGCGUCGUGcugcccaGUCGCUgGCUAacgaucuacuGCCgCCa -3'
miRNA:   3'- aUCGCAGUAC-------UAGCGAgCGGU----------UGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 174192 0.7 0.869804
Target:  5'- -cGCGUCAUGGU-GCUCaCCAAgUCCu -3'
miRNA:   3'- auCGCAGUACUAgCGAGcGGUUgGGG- -5'
14211 3' -55.1 NC_003521.1 + 233784 0.7 0.862461
Target:  5'- gGGCGUCuccgGUGGUCuuucuacgugcaGCagCGCCAGCCCa -3'
miRNA:   3'- aUCGCAG----UACUAG------------CGa-GCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 53865 0.75 0.590184
Target:  5'- uUGGCGUCGUugaaguagcugcucGAgugCGUUCGCCGccGCCCCc -3'
miRNA:   3'- -AUCGCAGUA--------------CUa--GCGAGCGGU--UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 191147 0.72 0.741819
Target:  5'- cGGCGaCAgcgccgCGCUCGcCCGGCCCCu -3'
miRNA:   3'- aUCGCaGUacua--GCGAGC-GGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 239013 0.72 0.769976
Target:  5'- gAGaCGUCGUGGcUGCauUCGCCgGACCCCc -3'
miRNA:   3'- aUC-GCAGUACUaGCG--AGCGG-UUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 187652 0.71 0.79707
Target:  5'- cGGCGUCGccGAccuccUCGC-CGCCGuCCCCg -3'
miRNA:   3'- aUCGCAGUa-CU-----AGCGaGCGGUuGGGG- -5'
14211 3' -55.1 NC_003521.1 + 102326 0.7 0.831155
Target:  5'- -cGuCGUCGUGcgCGUgggCGCCGACgCCg -3'
miRNA:   3'- auC-GCAGUACuaGCGa--GCGGUUGgGG- -5'
14211 3' -55.1 NC_003521.1 + 193911 0.7 0.847183
Target:  5'- gGGUGUgCA-GAUCGuCUCGCaacGCCCCa -3'
miRNA:   3'- aUCGCA-GUaCUAGC-GAGCGgu-UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 196372 0.7 0.847183
Target:  5'- gUGGCGUUGUacUCGCaUCGCCgAGCCgCCg -3'
miRNA:   3'- -AUCGCAGUAcuAGCG-AGCGG-UUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 213397 0.7 0.862461
Target:  5'- gAGCGUgAUGAagaagaCGCUgGUCAGCaCCCg -3'
miRNA:   3'- aUCGCAgUACUa-----GCGAgCGGUUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.