miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 3' -55.1 NC_003521.1 + 111336 0.66 0.964251
Target:  5'- -cGUGUCc----CGCUCGCCAugUCCu -3'
miRNA:   3'- auCGCAGuacuaGCGAGCGGUugGGG- -5'
14211 3' -55.1 NC_003521.1 + 98992 0.66 0.960898
Target:  5'- aGGCGUCAggggagguaccgcGGUCGUcuuguagacgauggCGCCGGCUCCg -3'
miRNA:   3'- aUCGCAGUa------------CUAGCGa-------------GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 102087 0.66 0.964251
Target:  5'- gGGCGUgAUGAUgCGCagGCcCAGCUUCu -3'
miRNA:   3'- aUCGCAgUACUA-GCGagCG-GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 226614 0.66 0.964251
Target:  5'- cGGCGUCA-GGg-GCUCGCCGcaGCacaCCa -3'
miRNA:   3'- aUCGCAGUaCUagCGAGCGGU--UGg--GG- -5'
14211 3' -55.1 NC_003521.1 + 81034 0.66 0.975652
Target:  5'- -cGCugGUCugguUGAUguugaCGCacugCGCCAACCCCa -3'
miRNA:   3'- auCG--CAGu---ACUA-----GCGa---GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 196187 0.66 0.973091
Target:  5'- -cGUG-CGUGGUCuuuuGCgaaUCGCCGACCCg -3'
miRNA:   3'- auCGCaGUACUAG----CG---AGCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 130924 0.66 0.975652
Target:  5'- cGGCGUCGgcGGUCGaggUCGCaCGcaguuacuggugGCCCCg -3'
miRNA:   3'- aUCGCAGUa-CUAGCg--AGCG-GU------------UGGGG- -5'
14211 3' -55.1 NC_003521.1 + 47085 0.66 0.975652
Target:  5'- -cGCGcaggaacuccuUCAUGGUgGC-CGCCAGCUCg -3'
miRNA:   3'- auCGC-----------AGUACUAgCGaGCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 156725 0.66 0.975652
Target:  5'- gAGCG-CAUGuUCGUgggcucggucuUUGCCGcCCCCa -3'
miRNA:   3'- aUCGCaGUACuAGCG-----------AGCGGUuGGGG- -5'
14211 3' -55.1 NC_003521.1 + 109248 0.66 0.960898
Target:  5'- -cGCGUgAUGAUCagGCUCugGCCcACCaCCg -3'
miRNA:   3'- auCGCAgUACUAG--CGAG--CGGuUGG-GG- -5'
14211 3' -55.1 NC_003521.1 + 181805 0.66 0.973091
Target:  5'- -uGCGUCAgggcggGGUCGUcuccguagccuUCGUCGuCCCCc -3'
miRNA:   3'- auCGCAGUa-----CUAGCG-----------AGCGGUuGGGG- -5'
14211 3' -55.1 NC_003521.1 + 142229 0.66 0.964251
Target:  5'- aUGGCcUCGUcgcugCGCUCGCgGGCCCg -3'
miRNA:   3'- -AUCGcAGUAcua--GCGAGCGgUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 186367 0.66 0.967397
Target:  5'- aGGCGUCGauaaccAUCGCccCGUCGGCCCa -3'
miRNA:   3'- aUCGCAGUac----UAGCGa-GCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 181851 0.66 0.967397
Target:  5'- cUAGCGgc-UGAuUCGCcaCGCaCGACCCCu -3'
miRNA:   3'- -AUCGCaguACU-AGCGa-GCG-GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 68238 0.66 0.973091
Target:  5'- gAGCGguacguUCAccUGGcggUGCgacCGCCGACCCCg -3'
miRNA:   3'- aUCGC------AGU--ACUa--GCGa--GCGGUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 186860 0.66 0.967397
Target:  5'- cGGCGgCGUGcagcacgGCUCGUCGGCCCa -3'
miRNA:   3'- aUCGCaGUACuag----CGAGCGGUUGGGg -5'
14211 3' -55.1 NC_003521.1 + 136225 0.66 0.973091
Target:  5'- cGGCGUCuacagcuaccucAUGA-CGCaCGCCGGCCgCu -3'
miRNA:   3'- aUCGCAG------------UACUaGCGaGCGGUUGGgG- -5'
14211 3' -55.1 NC_003521.1 + 124833 0.66 0.975652
Target:  5'- cUAGCGUCAgcaGAuuuUCGCgCGCCAugGgUCCg -3'
miRNA:   3'- -AUCGCAGUa--CU---AGCGaGCGGU--UgGGG- -5'
14211 3' -55.1 NC_003521.1 + 236674 0.66 0.973091
Target:  5'- gGGUGUCAUGGUCuCUaCGCgguuguggaaCGGCCUCg -3'
miRNA:   3'- aUCGCAGUACUAGcGA-GCG----------GUUGGGG- -5'
14211 3' -55.1 NC_003521.1 + 233239 0.66 0.970342
Target:  5'- -uGCGUCAUGcuacGUCaCUCGUCAccguACCCa -3'
miRNA:   3'- auCGCAGUAC----UAGcGAGCGGU----UGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.