miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 28737 0.66 0.843499
Target:  5'- cACGCCGAcaACCAGac-GCGCGCGGg -3'
miRNA:   3'- cUGCGGCUcgUGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 149355 0.66 0.843498
Target:  5'- cACGCauacacccgCGAGCugCGcgcGUAUGCGCGCAu -3'
miRNA:   3'- cUGCG---------GCUCGugGU---CGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 137035 0.66 0.843498
Target:  5'- -uCGCCgGAGCACggCGGCGagGUGCGCGAg -3'
miRNA:   3'- cuGCGG-CUCGUG--GUCGUa-CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 84179 0.66 0.84112
Target:  5'- uGACGUCGAGCACgAagaggaagcccaggGCGU-CGCGCAGc -3'
miRNA:   3'- -CUGCGGCUCGUGgU--------------CGUAcGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 222626 0.67 0.835507
Target:  5'- --gGCCGAcaugugaucgaaGgGCCGGCAgGCGCGCAGc -3'
miRNA:   3'- cugCGGCU------------CgUGGUCGUaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 125968 0.67 0.835507
Target:  5'- gGGCGUC-AGCACCAGUu--CGCACAc -3'
miRNA:   3'- -CUGCGGcUCGUGGUCGuacGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 203079 0.67 0.835507
Target:  5'- --aGCCGGGgACCAGC---CGCACAGa -3'
miRNA:   3'- cugCGGCUCgUGGUCGuacGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 90060 0.67 0.835507
Target:  5'- -uCGCgCGAGCGCaCAcGCGggcggGCGCGCAc -3'
miRNA:   3'- cuGCG-GCUCGUG-GU-CGUa----CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 137565 0.67 0.835507
Target:  5'- --gGCCGAGCAgCAGUGcaCGCGCGAa -3'
miRNA:   3'- cugCGGCUCGUgGUCGUacGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 124652 0.67 0.835507
Target:  5'- --gGCCacagGAGCAgCAGCAggUGCGCACc- -3'
miRNA:   3'- cugCGG----CUCGUgGUCGU--ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 153496 0.67 0.834697
Target:  5'- --gGCCGucuggucAGCGCCAGCGUGgacCGCACc- -3'
miRNA:   3'- cugCGGC-------UCGUGGUCGUAC---GCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 181330 0.67 0.827338
Target:  5'- gGGCGCCGucugguucuguAGCugCAGCGUGauuguCGCGCc- -3'
miRNA:   3'- -CUGCGGC-----------UCGugGUCGUAC-----GCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 207570 0.67 0.827338
Target:  5'- cGCGCCG-GCcuGCUGGCGUGUGC-CAGc -3'
miRNA:   3'- cUGCGGCuCG--UGGUCGUACGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 104575 0.67 0.827338
Target:  5'- cACGUCGgcguAGCgGCCGGCGUGCGuCAUGAg -3'
miRNA:   3'- cUGCGGC----UCG-UGGUCGUACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 95089 0.67 0.827338
Target:  5'- aGGgGCuCGGGCGCCuugAGCGgccGCGCGCGc -3'
miRNA:   3'- -CUgCG-GCUCGUGG---UCGUa--CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 128409 0.67 0.827338
Target:  5'- gGGCGUCGguccgaaaGGCgGCCGGUcgGCGCACu- -3'
miRNA:   3'- -CUGCGGC--------UCG-UGGUCGuaCGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 110459 0.67 0.827338
Target:  5'- uGGCGCUGAGCGCgcaCGGCGccUGCggccGCACGu -3'
miRNA:   3'- -CUGCGGCUCGUG---GUCGU--ACG----CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 147707 0.67 0.827338
Target:  5'- --gGCC-AGCACCAuGUgacccGUGCGCACGAa -3'
miRNA:   3'- cugCGGcUCGUGGU-CG-----UACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 37433 0.67 0.826512
Target:  5'- cGGCGCCGAGCcucugaaggugacGCUgugGGCucGCGCGCGGg -3'
miRNA:   3'- -CUGCGGCUCG-------------UGG---UCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224319 0.67 0.822355
Target:  5'- --aGCCGAGCGCCgcagcccgugcucguAGCGUcGcCGCACGu -3'
miRNA:   3'- cugCGGCUCGUGG---------------UCGUA-C-GCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.