miRNA display CGI


Results 41 - 60 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 161062 0.66 0.858924
Target:  5'- aACGCCGGuccuCACCGGCccgGCGCugAu -3'
miRNA:   3'- cUGCGGCUc---GUGGUCGua-CGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 87417 0.66 0.858924
Target:  5'- cACGCCGGuggcGCACCuGCAcgaggagauccUGCGCuACGAc -3'
miRNA:   3'- cUGCGGCU----CGUGGuCGU-----------ACGCG-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 166749 0.66 0.858924
Target:  5'- --gGCC-AGCACCAGCuggAUGCGguCGAc -3'
miRNA:   3'- cugCGGcUCGUGGUCG---UACGCguGUU- -5'
14235 5' -58.3 NC_003521.1 + 217851 0.66 0.858924
Target:  5'- aGGCGCaGAGCcCCAGCAgcacgacGUGCACc- -3'
miRNA:   3'- -CUGCGgCUCGuGGUCGUa------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 18987 0.66 0.851307
Target:  5'- gGACGCCcacAGCgGCCAGC-UGuUGCACAAc -3'
miRNA:   3'- -CUGCGGc--UCG-UGGUCGuAC-GCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 60328 0.66 0.851307
Target:  5'- cGGCGCUGAuGCAgCCGGCcaaccUGCGCAg-- -3'
miRNA:   3'- -CUGCGGCU-CGU-GGUCGu----ACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 218462 0.66 0.851307
Target:  5'- --gGCCG-GCACCAcGcCGUGgGCGCAGu -3'
miRNA:   3'- cugCGGCuCGUGGU-C-GUACgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 18550 0.66 0.851307
Target:  5'- gGGCuCUGGGCACCAuCAcGCGCGCGc -3'
miRNA:   3'- -CUGcGGCUCGUGGUcGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 147910 0.66 0.851307
Target:  5'- uGGCGCCGucGCugCcGUAUcgaGCGCACGGg -3'
miRNA:   3'- -CUGCGGCu-CGugGuCGUA---CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 99228 0.66 0.851307
Target:  5'- uGACGauaGGGCugUAGCugacgGUGCGCGCGu -3'
miRNA:   3'- -CUGCgg-CUCGugGUCG-----UACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 15248 0.66 0.851307
Target:  5'- -cCGCCGAGCGCCAGgA--CGaCACGGg -3'
miRNA:   3'- cuGCGGCUCGUGGUCgUacGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 117967 0.66 0.851307
Target:  5'- cGGCgGCC-AGCACCAGCGcuacgacgagcUGCGCgACGc -3'
miRNA:   3'- -CUG-CGGcUCGUGGUCGU-----------ACGCG-UGUu -5'
14235 5' -58.3 NC_003521.1 + 75165 0.66 0.851307
Target:  5'- gGACGCauGGUGCCAGCGcgGCGUGCu- -3'
miRNA:   3'- -CUGCGgcUCGUGGUCGUa-CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 72517 0.66 0.851307
Target:  5'- gGAgGUgGcGCGCCucauGCGUGUGCACGAc -3'
miRNA:   3'- -CUgCGgCuCGUGGu---CGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 209868 0.66 0.851307
Target:  5'- -gUGCCGAGCGCCuGGCuUG-GCACu- -3'
miRNA:   3'- cuGCGGCUCGUGG-UCGuACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 60172 0.66 0.851307
Target:  5'- aACGCCugGAGCcgcuacagaCAGUGUGCGCGCGGa -3'
miRNA:   3'- cUGCGG--CUCGug-------GUCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 48714 0.66 0.851307
Target:  5'- cGAgGCCGGGagagguggagaCGCCGGCGacgcUGCaGCACAAg -3'
miRNA:   3'- -CUgCGGCUC-----------GUGGUCGU----ACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 12259 0.66 0.851307
Target:  5'- -cUGCCGAGCugCAGUccgGUGaacuGCACGGu -3'
miRNA:   3'- cuGCGGCUCGugGUCG---UACg---CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 65394 0.66 0.851307
Target:  5'- uACGCCGAGCACgccacuCAGac-GCGCGCc- -3'
miRNA:   3'- cUGCGGCUCGUG------GUCguaCGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 28737 0.66 0.843499
Target:  5'- cACGCCGAcaACCAGac-GCGCGCGGg -3'
miRNA:   3'- cUGCGGCUcgUGGUCguaCGCGUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.