miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 104056 0.7 0.639061
Target:  5'- cGACGCCGucuGCGCCAGCA--CGUugGu -3'
miRNA:   3'- -CUGCGGCu--CGUGGUCGUacGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 68951 0.7 0.649069
Target:  5'- aGCGUCuGGUccgggagacgGCCAGCAUGCGCAUGAa -3'
miRNA:   3'- cUGCGGcUCG----------UGGUCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 103326 0.7 0.659064
Target:  5'- aGGCGCUGAcGCGCCAGCGccGUGCGg-- -3'
miRNA:   3'- -CUGCGGCU-CGUGGUCGUa-CGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 136812 0.7 0.659064
Target:  5'- -cCGCCGAcGaCcCCGGCGUGCGCAUg- -3'
miRNA:   3'- cuGCGGCU-C-GuGGUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 149927 0.7 0.668043
Target:  5'- cGACGCCGAcGCAUgCGcaguucaacgugcGCAUGCGCGCu- -3'
miRNA:   3'- -CUGCGGCU-CGUG-GU-------------CGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 63887 0.7 0.669039
Target:  5'- cGCGCCggGAGCugCAGCAguUGgGCACc- -3'
miRNA:   3'- cUGCGG--CUCGugGUCGU--ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 110645 0.7 0.669039
Target:  5'- -uCGCCGGGCGCCGGCAcgGU-CACGg -3'
miRNA:   3'- cuGCGGCUCGUGGUCGUa-CGcGUGUu -5'
14235 5' -58.3 NC_003521.1 + 104736 0.69 0.678985
Target:  5'- uGACGCacacCGAGCccuCCAGCGUggagaugaGCGCGCAGc -3'
miRNA:   3'- -CUGCG----GCUCGu--GGUCGUA--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 137475 0.69 0.678985
Target:  5'- aGugGaaGGGCGCCGGCGUGuCGCGg-- -3'
miRNA:   3'- -CugCggCUCGUGGUCGUAC-GCGUguu -5'
14235 5' -58.3 NC_003521.1 + 220060 0.69 0.678985
Target:  5'- aACGCCaggaaggacAGCACCAGCAgcGCGUACAc -3'
miRNA:   3'- cUGCGGc--------UCGUGGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 169356 0.69 0.678985
Target:  5'- cGCGUCGGcGCGCCAGCAUGUaaGuCACGu -3'
miRNA:   3'- cUGCGGCU-CGUGGUCGUACG--C-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 103583 0.69 0.688894
Target:  5'- -cCGCCGucGGCcCCGGCcgGUGCGCGGg -3'
miRNA:   3'- cuGCGGC--UCGuGGUCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 48237 0.69 0.688894
Target:  5'- cGACGCCGAGCAgCCuGCGUuccGCGgGgGAa -3'
miRNA:   3'- -CUGCGGCUCGU-GGuCGUA---CGCgUgUU- -5'
14235 5' -58.3 NC_003521.1 + 22431 0.69 0.698758
Target:  5'- cGugGCCGAGUACC-GCccGCGCuuCAc -3'
miRNA:   3'- -CugCGGCUCGUGGuCGuaCGCGu-GUu -5'
14235 5' -58.3 NC_003521.1 + 170552 0.69 0.708568
Target:  5'- cGGCGCCGAccuGCGCCuGCccGUGCuGCACc- -3'
miRNA:   3'- -CUGCGGCU---CGUGGuCG--UACG-CGUGuu -5'
14235 5' -58.3 NC_003521.1 + 15318 0.69 0.708568
Target:  5'- cGGCGCCGAGCgggugAUCAGC--GCGCugGu -3'
miRNA:   3'- -CUGCGGCUCG-----UGGUCGuaCGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 37058 0.69 0.718317
Target:  5'- gGACGCCGAaaACCGGCAgcugcUGgGCACc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 213022 0.69 0.718317
Target:  5'- uGGCGCCGGGCgaGCCGGCcgaGCGgGCc- -3'
miRNA:   3'- -CUGCGGCUCG--UGGUCGua-CGCgUGuu -5'
14235 5' -58.3 NC_003521.1 + 226238 0.69 0.718317
Target:  5'- -gUGCCGuAGC-CCGGCGUGUGCAg-- -3'
miRNA:   3'- cuGCGGC-UCGuGGUCGUACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 151882 0.69 0.718317
Target:  5'- gGGCGCUGuGCugCAGCAguuucccgaagcUGuCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGugGUCGU------------AC-GCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.