miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 60172 0.66 0.851307
Target:  5'- aACGCCugGAGCcgcuacagaCAGUGUGCGCGCGGa -3'
miRNA:   3'- cUGCGG--CUCGug-------GUCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 60328 0.66 0.851307
Target:  5'- cGGCGCUGAuGCAgCCGGCcaaccUGCGCAg-- -3'
miRNA:   3'- -CUGCGGCU-CGU-GGUCGu----ACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 62222 0.67 0.793038
Target:  5'- gGACGCCGuGCugCAGgAggGCGCcCGg -3'
miRNA:   3'- -CUGCGGCuCGugGUCgUa-CGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 63887 0.7 0.669039
Target:  5'- cGCGCCggGAGCugCAGCAguUGgGCACc- -3'
miRNA:   3'- cUGCGG--CUCGugGUCGU--ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 64743 0.71 0.599049
Target:  5'- gGACGCCGuGGCcaagacGCCGGCcgGCGCGgCAc -3'
miRNA:   3'- -CUGCGGC-UCG------UGGUCGuaCGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 64871 0.66 0.858925
Target:  5'- gGGCGCCGAcguGCGCgAGCuguacgaGCGCuACAAa -3'
miRNA:   3'- -CUGCGGCU---CGUGgUCGua-----CGCG-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 65394 0.66 0.851307
Target:  5'- uACGCCGAGCACgccacuCAGac-GCGCGCc- -3'
miRNA:   3'- cUGCGGCUCGUG------GUCguaCGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 68951 0.7 0.649069
Target:  5'- aGCGUCuGGUccgggagacgGCCAGCAUGCGCAUGAa -3'
miRNA:   3'- cUGCGGcUCG----------UGGUCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 70334 0.66 0.880579
Target:  5'- uGACGCCGu---CCAGCAggGCGUugAGc -3'
miRNA:   3'- -CUGCGGCucguGGUCGUa-CGCGugUU- -5'
14235 5' -58.3 NC_003521.1 + 70723 0.67 0.801841
Target:  5'- uGCGCCGGauGUACCGGCAcuucguccagcUGCaGCGCGc -3'
miRNA:   3'- cUGCGGCU--CGUGGUCGU-----------ACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 70909 0.67 0.801841
Target:  5'- aGCGCCGucagagccgucAGCGCCAGCAggGUcCACAGc -3'
miRNA:   3'- cUGCGGC-----------UCGUGGUCGUa-CGcGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 71788 0.76 0.347197
Target:  5'- cGCGCCGAGaccagcuugACCGGCGcGCGCACAAa -3'
miRNA:   3'- cUGCGGCUCg--------UGGUCGUaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 72198 0.66 0.866346
Target:  5'- uGGCGCagcAGCAaCAGCAgaugGCGCACGc -3'
miRNA:   3'- -CUGCGgc-UCGUgGUCGUa---CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 72517 0.66 0.851307
Target:  5'- gGAgGUgGcGCGCCucauGCGUGUGCACGAc -3'
miRNA:   3'- -CUgCGgCuCGUGGu---CGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 73211 0.71 0.578165
Target:  5'- cGACcCCGAGCGCCuGCGgcgccucUGCGCGCc- -3'
miRNA:   3'- -CUGcGGCUCGUGGuCGU-------ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 73766 0.66 0.858925
Target:  5'- --gGCCG-GCACCGGCGUcaugaGCGcCACGc -3'
miRNA:   3'- cugCGGCuCGUGGUCGUA-----CGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 74118 0.69 0.727995
Target:  5'- cGACGCCcauGGGCGCCGuGCAggacgacgugGCGCGCc- -3'
miRNA:   3'- -CUGCGG---CUCGUGGU-CGUa---------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 74557 0.66 0.873566
Target:  5'- cGCGCCGuGCGCguGCccGUGaGCACGg -3'
miRNA:   3'- cUGCGGCuCGUGguCG--UACgCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 74825 0.72 0.520532
Target:  5'- cGGCGCCGAGCGCgaCGGCGUcccgcccucacGCuGCACGAc -3'
miRNA:   3'- -CUGCGGCUCGUG--GUCGUA-----------CG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 75165 0.66 0.851307
Target:  5'- gGACGCauGGUGCCAGCGcgGCGUGCu- -3'
miRNA:   3'- -CUGCGgcUCGUGGUCGUa-CGCGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.