Results 41 - 60 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14235 | 5' | -58.3 | NC_003521.1 | + | 71788 | 0.76 | 0.347197 |
Target: 5'- cGCGCCGAGaccagcuugACCGGCGcGCGCACAAa -3' miRNA: 3'- cUGCGGCUCg--------UGGUCGUaCGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 216195 | 0.76 | 0.347197 |
Target: 5'- aGGCGCUGAGCACCGGCGcgggguccuccUG-GCACAc -3' miRNA: 3'- -CUGCGGCUCGUGGUCGU-----------ACgCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 84670 | 0.76 | 0.347197 |
Target: 5'- aGGCGUCGcagcAGCGCCAGCAgcUGCGUGCAc -3' miRNA: 3'- -CUGCGGC----UCGUGGUCGU--ACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 211395 | 0.77 | 0.303183 |
Target: 5'- aGGCGCCGGcucucguGCAgCAGCcgGCGCACAu -3' miRNA: 3'- -CUGCGGCU-------CGUgGUCGuaCGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 77273 | 0.78 | 0.258719 |
Target: 5'- -cCGCCGGGCACCAGCAgggugGaguaGCACAGg -3' miRNA: 3'- cuGCGGCUCGUGGUCGUa----Cg---CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 59090 | 0.72 | 0.559407 |
Target: 5'- cGCGCgGccGCuugGCCAGCGUGCGCGCGu -3' miRNA: 3'- cUGCGgCu-CG---UGGUCGUACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 103500 | 0.72 | 0.559407 |
Target: 5'- uGGCGaaagggCGAGC-CCAGCAgcagGCGCGCGAa -3' miRNA: 3'- -CUGCg-----GCUCGuGGUCGUa---CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 137475 | 0.69 | 0.678985 |
Target: 5'- aGugGaaGGGCGCCGGCGUGuCGCGg-- -3' miRNA: 3'- -CugCggCUCGUGGUCGUAC-GCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 63887 | 0.7 | 0.669039 |
Target: 5'- cGCGCCggGAGCugCAGCAguUGgGCACc- -3' miRNA: 3'- cUGCGG--CUCGugGUCGU--ACgCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 110645 | 0.7 | 0.669039 |
Target: 5'- -uCGCCGGGCGCCGGCAcgGU-CACGg -3' miRNA: 3'- cuGCGGCUCGUGGUCGUa-CGcGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 136812 | 0.7 | 0.659064 |
Target: 5'- -cCGCCGAcGaCcCCGGCGUGCGCAUg- -3' miRNA: 3'- cuGCGGCU-C-GuGGUCGUACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 103326 | 0.7 | 0.659064 |
Target: 5'- aGGCGCUGAcGCGCCAGCGccGUGCGg-- -3' miRNA: 3'- -CUGCGGCU-CGUGGUCGUa-CGCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 68951 | 0.7 | 0.649069 |
Target: 5'- aGCGUCuGGUccgggagacgGCCAGCAUGCGCAUGAa -3' miRNA: 3'- cUGCGGcUCG----------UGGUCGUACGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 104056 | 0.7 | 0.639061 |
Target: 5'- cGACGCCGucuGCGCCAGCA--CGUugGu -3' miRNA: 3'- -CUGCGGCu--CGUGGUCGUacGCGugUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 100969 | 0.7 | 0.629047 |
Target: 5'- aGCGCCGuGC-CCGGC--GCGCACGg -3' miRNA: 3'- cUGCGGCuCGuGGUCGuaCGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 124534 | 0.71 | 0.619036 |
Target: 5'- --aGCUGuccuccAGCGCCAGCuUGCGCACGu -3' miRNA: 3'- cugCGGC------UCGUGGUCGuACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 116367 | 0.71 | 0.609035 |
Target: 5'- cGAgGCCGAGCugCuGC-UGCcGCGCGAc -3' miRNA: 3'- -CUgCGGCUCGugGuCGuACG-CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 64743 | 0.71 | 0.599049 |
Target: 5'- gGACGCCGuGGCcaagacGCCGGCcgGCGCGgCAc -3' miRNA: 3'- -CUGCGGC-UCG------UGGUCGuaCGCGU-GUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 73211 | 0.71 | 0.578165 |
Target: 5'- cGACcCCGAGCGCCuGCGgcgccucUGCGCGCc- -3' miRNA: 3'- -CUGcGGCUCGUGGuCGU-------ACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 214542 | 0.72 | 0.559407 |
Target: 5'- aGAUGCCcAGCACCAGCAccgGgGUGCAGu -3' miRNA: 3'- -CUGCGGcUCGUGGUCGUa--CgCGUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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